These are the packages that would be merged, in order: Calculating dependencies * IMPORTANT: 3 news items need reading for repository 'gentoo'. * Use eselect news read to view new items. .... done! Dependency resolution took 3.68 s (backtrack: 0/20). [ebuild N ] dev-python/numcodecs-0.12.1-r1::science USE="-test" PYTHON_TARGETS="python3_11 -python3_10" 0 KiB Total: 1 package (1 new), Size of downloads: 0 KiB >>> Verifying ebuild manifests >>> Emerging (1 of 1) dev-python/numcodecs-0.12.1-r1::science * numcodecs-0.12.1.tar.gz BLAKE2B SHA512 size ;-) ... [ ok ] >>> Unpacking source... >>> Unpacking numcodecs-0.12.1.tar.gz to /var/tmp/portage/dev-python/numcodecs-0.12.1-r1/work >>> Source unpacked in /var/tmp/portage/dev-python/numcodecs-0.12.1-r1/work >>> Preparing source in /var/tmp/portage/dev-python/numcodecs-0.12.1-r1/work/numcodecs-0.12.1 ... * Build system packages: * dev-python/gpep517 : 15 * dev-python/installer : 0.7.0 * dev-python/setuptools : 69.0.2-r1 * dev-python/setuptools-rust : 1.8.1 * dev-python/setuptools-scm : 8.0.4 * dev-python/wheel : 0.42.0 >>> Source prepared. >>> Configuring source in /var/tmp/portage/dev-python/numcodecs-0.12.1-r1/work/numcodecs-0.12.1 ... >>> Source configured. >>> Compiling source in /var/tmp/portage/dev-python/numcodecs-0.12.1-r1/work/numcodecs-0.12.1 ... * python3_11: running distutils-r1_run_phase python_compile * Building the wheel for numcodecs-0.12.1 via setuptools.build_meta python3.11 -m gpep517 build-wheel --prefix=/usr --backend setuptools.build_meta --output-fd 3 --wheel-dir /var/tmp/portage/dev-python/numcodecs-0.12.1-r1/work/numcodecs-0.12.1-python3_11/wheel 2024-02-09 12:37:39,279 gpep517 INFO Building wheel via backend setuptools.build_meta 2024-02-09 12:37:40,946 root INFO running bdist_wheel 2024-02-09 12:37:41,037 root INFO running build 2024-02-09 12:37:41,037 root INFO running build_py 2024-02-09 12:37:41,058 root INFO creating /var/tmp/portage/dev-python/numcodecs-0.12.1-r1/work/numcodecs-0.12.1-python3_11/build 2024-02-09 12:37:41,059 root INFO creating /var/tmp/portage/dev-python/numcodecs-0.12.1-r1/work/numcodecs-0.12.1-python3_11/build/lib.linux-x86_64-cpython-311 2024-02-09 12:37:41,059 root INFO creating /var/tmp/portage/dev-python/numcodecs-0.12.1-r1/work/numcodecs-0.12.1-python3_11/build/lib.linux-x86_64-cpython-311/numcodecs 2024-02-09 12:37:41,059 root INFO copying ./numcodecs/zfpy.py -> /var/tmp/portage/dev-python/numcodecs-0.12.1-r1/work/numcodecs-0.12.1-python3_11/build/lib.linux-x86_64-cpython-311/numcodecs 2024-02-09 12:37:41,059 root INFO copying ./numcodecs/quantize.py -> /var/tmp/portage/dev-python/numcodecs-0.12.1-r1/work/numcodecs-0.12.1-python3_11/build/lib.linux-x86_64-cpython-311/numcodecs 2024-02-09 12:37:41,059 root INFO copying ./numcodecs/msgpacks.py -> /var/tmp/portage/dev-python/numcodecs-0.12.1-r1/work/numcodecs-0.12.1-python3_11/build/lib.linux-x86_64-cpython-311/numcodecs 2024-02-09 12:37:41,060 root INFO copying ./numcodecs/gzip.py -> /var/tmp/portage/dev-python/numcodecs-0.12.1-r1/work/numcodecs-0.12.1-python3_11/build/lib.linux-x86_64-cpython-311/numcodecs 2024-02-09 12:37:41,060 root INFO copying ./numcodecs/delta.py -> /var/tmp/portage/dev-python/numcodecs-0.12.1-r1/work/numcodecs-0.12.1-python3_11/build/lib.linux-x86_64-cpython-311/numcodecs 2024-02-09 12:37:41,060 root INFO copying ./numcodecs/ndarray_like.py -> /var/tmp/portage/dev-python/numcodecs-0.12.1-r1/work/numcodecs-0.12.1-python3_11/build/lib.linux-x86_64-cpython-311/numcodecs 2024-02-09 12:37:41,060 root INFO copying ./numcodecs/categorize.py -> /var/tmp/portage/dev-python/numcodecs-0.12.1-r1/work/numcodecs-0.12.1-python3_11/build/lib.linux-x86_64-cpython-311/numcodecs 2024-02-09 12:37:41,061 root INFO copying ./numcodecs/packbits.py -> /var/tmp/portage/dev-python/numcodecs-0.12.1-r1/work/numcodecs-0.12.1-python3_11/build/lib.linux-x86_64-cpython-311/numcodecs 2024-02-09 12:37:41,061 root INFO copying ./numcodecs/checksum32.py -> /var/tmp/portage/dev-python/numcodecs-0.12.1-r1/work/numcodecs-0.12.1-python3_11/build/lib.linux-x86_64-cpython-311/numcodecs 2024-02-09 12:37:41,061 root INFO copying ./numcodecs/pickles.py -> /var/tmp/portage/dev-python/numcodecs-0.12.1-r1/work/numcodecs-0.12.1-python3_11/build/lib.linux-x86_64-cpython-311/numcodecs 2024-02-09 12:37:41,061 root INFO copying ./numcodecs/json.py -> /var/tmp/portage/dev-python/numcodecs-0.12.1-r1/work/numcodecs-0.12.1-python3_11/build/lib.linux-x86_64-cpython-311/numcodecs 2024-02-09 12:37:41,061 root INFO copying ./numcodecs/__init__.py -> 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/var/tmp/portage/dev-python/numcodecs-0.12.1-r1/work/numcodecs-0.12.1-python3_11/build/lib.linux-x86_64-cpython-311/numcodecs 2024-02-09 12:37:41,064 root INFO copying ./numcodecs/abc.py -> /var/tmp/portage/dev-python/numcodecs-0.12.1-r1/work/numcodecs-0.12.1-python3_11/build/lib.linux-x86_64-cpython-311/numcodecs 2024-02-09 12:37:41,064 root INFO copying ./numcodecs/compat.py -> /var/tmp/portage/dev-python/numcodecs-0.12.1-r1/work/numcodecs-0.12.1-python3_11/build/lib.linux-x86_64-cpython-311/numcodecs 2024-02-09 12:37:41,065 root INFO creating /var/tmp/portage/dev-python/numcodecs-0.12.1-r1/work/numcodecs-0.12.1-python3_11/build/lib.linux-x86_64-cpython-311/numcodecs/tests 2024-02-09 12:37:41,065 root INFO copying ./numcodecs/tests/test_fixedscaleoffset.py -> /var/tmp/portage/dev-python/numcodecs-0.12.1-r1/work/numcodecs-0.12.1-python3_11/build/lib.linux-x86_64-cpython-311/numcodecs/tests 2024-02-09 12:37:41,065 root INFO copying ./numcodecs/tests/test_pickles.py -> 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root INFO copying ./numcodecs/tests/test_shuffle.py -> /var/tmp/portage/dev-python/numcodecs-0.12.1-r1/work/numcodecs-0.12.1-python3_11/build/lib.linux-x86_64-cpython-311/numcodecs/tests 2024-02-09 12:37:41,067 root INFO copying ./numcodecs/tests/test_bitround.py -> /var/tmp/portage/dev-python/numcodecs-0.12.1-r1/work/numcodecs-0.12.1-python3_11/build/lib.linux-x86_64-cpython-311/numcodecs/tests 2024-02-09 12:37:41,067 root INFO copying ./numcodecs/tests/test_entrypoints_backport.py -> /var/tmp/portage/dev-python/numcodecs-0.12.1-r1/work/numcodecs-0.12.1-python3_11/build/lib.linux-x86_64-cpython-311/numcodecs/tests 2024-02-09 12:37:41,067 root INFO copying ./numcodecs/tests/test_base64.py -> /var/tmp/portage/dev-python/numcodecs-0.12.1-r1/work/numcodecs-0.12.1-python3_11/build/lib.linux-x86_64-cpython-311/numcodecs/tests 2024-02-09 12:37:41,068 root INFO copying ./numcodecs/tests/test_blosc.py -> 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12:37:41,069 root INFO copying ./numcodecs/tests/test_vlen_utf8.py -> /var/tmp/portage/dev-python/numcodecs-0.12.1-r1/work/numcodecs-0.12.1-python3_11/build/lib.linux-x86_64-cpython-311/numcodecs/tests 2024-02-09 12:37:41,069 root INFO copying ./numcodecs/tests/test_vlen_array.py -> /var/tmp/portage/dev-python/numcodecs-0.12.1-r1/work/numcodecs-0.12.1-python3_11/build/lib.linux-x86_64-cpython-311/numcodecs/tests 2024-02-09 12:37:41,069 root INFO copying ./numcodecs/tests/test_bz2.py -> /var/tmp/portage/dev-python/numcodecs-0.12.1-r1/work/numcodecs-0.12.1-python3_11/build/lib.linux-x86_64-cpython-311/numcodecs/tests 2024-02-09 12:37:41,070 root INFO copying ./numcodecs/tests/test_gzip.py -> /var/tmp/portage/dev-python/numcodecs-0.12.1-r1/work/numcodecs-0.12.1-python3_11/build/lib.linux-x86_64-cpython-311/numcodecs/tests 2024-02-09 12:37:41,070 root INFO copying ./numcodecs/tests/test_zlib.py -> 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12:37:41,071 root INFO copying ./numcodecs/tests/test_delta.py -> /var/tmp/portage/dev-python/numcodecs-0.12.1-r1/work/numcodecs-0.12.1-python3_11/build/lib.linux-x86_64-cpython-311/numcodecs/tests 2024-02-09 12:37:41,071 root INFO copying ./numcodecs/tests/test_zfpy.py -> /var/tmp/portage/dev-python/numcodecs-0.12.1-r1/work/numcodecs-0.12.1-python3_11/build/lib.linux-x86_64-cpython-311/numcodecs/tests 2024-02-09 12:37:41,071 root INFO copying ./numcodecs/tests/test_packbits.py -> /var/tmp/portage/dev-python/numcodecs-0.12.1-r1/work/numcodecs-0.12.1-python3_11/build/lib.linux-x86_64-cpython-311/numcodecs/tests 2024-02-09 12:37:41,072 root INFO copying ./numcodecs/tests/test_fletcher32.py -> /var/tmp/portage/dev-python/numcodecs-0.12.1-r1/work/numcodecs-0.12.1-python3_11/build/lib.linux-x86_64-cpython-311/numcodecs/tests 2024-02-09 12:37:41,072 root INFO copying ./numcodecs/tests/test_astype.py -> /var/tmp/portage/dev-python/numcodecs-0.12.1-r1/work/numcodecs-0.12.1-python3_11/build/lib.linux-x86_64-cpython-311/numcodecs/tests 2024-02-09 12:37:41,072 root INFO copying ./numcodecs/tests/test_zstd.py -> /var/tmp/portage/dev-python/numcodecs-0.12.1-r1/work/numcodecs-0.12.1-python3_11/build/lib.linux-x86_64-cpython-311/numcodecs/tests 2024-02-09 12:37:41,072 root INFO copying ./numcodecs/tests/test_lzma.py -> /var/tmp/portage/dev-python/numcodecs-0.12.1-r1/work/numcodecs-0.12.1-python3_11/build/lib.linux-x86_64-cpython-311/numcodecs/tests 2024-02-09 12:37:41,073 root INFO copying ./numcodecs/tests/test_json.py -> /var/tmp/portage/dev-python/numcodecs-0.12.1-r1/work/numcodecs-0.12.1-python3_11/build/lib.linux-x86_64-cpython-311/numcodecs/tests 2024-02-09 12:37:41,073 root INFO copying ./numcodecs/tests/common.py -> /var/tmp/portage/dev-python/numcodecs-0.12.1-r1/work/numcodecs-0.12.1-python3_11/build/lib.linux-x86_64-cpython-311/numcodecs/tests 2024-02-09 12:37:41,073 root INFO running egg_info 2024-02-09 12:37:41,096 root INFO writing numcodecs.egg-info/PKG-INFO 2024-02-09 12:37:41,098 root INFO writing dependency_links to numcodecs.egg-info/dependency_links.txt 2024-02-09 12:37:41,099 root INFO writing requirements to numcodecs.egg-info/requires.txt 2024-02-09 12:37:41,099 root INFO writing top-level names to numcodecs.egg-info/top_level.txt [02/09/24 12:37:41] ERROR listing git files failed - pretending git.py:24 there aren't any 2024-02-09 12:37:41,181 root INFO reading manifest file 'numcodecs.egg-info/SOURCES.txt' 2024-02-09 12:37:41,187 root INFO reading manifest template 'MANIFEST.in' 2024-02-09 12:37:41,210 root INFO adding license file 'LICENSE.txt' 2024-02-09 12:37:41,221 root INFO writing manifest file 'numcodecs.egg-info/SOURCES.txt' /usr/lib/python3.11/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'numcodecs.tests.package_with_entrypoint' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'numcodecs.tests.package_with_entrypoint' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'numcodecs.tests.package_with_entrypoint' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'numcodecs.tests.package_with_entrypoint' to be distributed and are already explicitly excluding 'numcodecs.tests.package_with_entrypoint' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) 2024-02-09 12:37:41,232 root INFO creating /var/tmp/portage/dev-python/numcodecs-0.12.1-r1/work/numcodecs-0.12.1-python3_11/build/lib.linux-x86_64-cpython-311/numcodecs/tests/package_with_entrypoint 2024-02-09 12:37:41,232 root INFO copying ./numcodecs/tests/package_with_entrypoint/__init__.py -> /var/tmp/portage/dev-python/numcodecs-0.12.1-r1/work/numcodecs-0.12.1-python3_11/build/lib.linux-x86_64-cpython-311/numcodecs/tests/package_with_entrypoint 2024-02-09 12:37:41,232 root INFO creating /var/tmp/portage/dev-python/numcodecs-0.12.1-r1/work/numcodecs-0.12.1-python3_11/build/lib.linux-x86_64-cpython-311/numcodecs/tests/package_with_entrypoint-0.1.dist-info 2024-02-09 12:37:41,232 root INFO copying ./numcodecs/tests/package_with_entrypoint-0.1.dist-info/entry_points.txt -> /var/tmp/portage/dev-python/numcodecs-0.12.1-r1/work/numcodecs-0.12.1-python3_11/build/lib.linux-x86_64-cpython-311/numcodecs/tests/package_with_entrypoint-0.1.dist-info 2024-02-09 12:37:41,233 root WARNING warning: build_py: byte-compiling is disabled, skipping. 2024-02-09 12:37:41,233 root INFO running build_ext [numcodecs] setting up Blosc extension [numcodecs] compiling Blosc extension without SSE2 support [numcodecs] compiling Blosc extension with AVX2 support [numcodecs] setting up Zstandard extension [numcodecs] setting up LZ4 extension [numcodecs] setting up compat extension [numcodecs] setting up shuffle extension [numcodecs] setting up vlen extension [numcodecs] setting up fletcher32 extension [numcodecs] setting up jenkins extension Compiling numcodecs/_shuffle.pyx because it changed. [1/1] Cythonizing numcodecs/_shuffle.pyx Compiling numcodecs/fletcher32.pyx because it changed. [1/1] Cythonizing numcodecs/fletcher32.pyx Compiling numcodecs/jenkins.pyx because it changed. [1/1] Cythonizing numcodecs/jenkins.pyx Compiling numcodecs/compat_ext.pyx because it changed. [1/1] Cythonizing numcodecs/compat_ext.pyx 2024-02-09 12:37:42,607 root INFO building 'numcodecs._shuffle' extension 2024-02-09 12:37:42,665 root INFO creating /var/tmp/portage/dev-python/numcodecs-0.12.1-r1/work/numcodecs-0.12.1-python3_11/build/temp.linux-x86_64-cpython-311 2024-02-09 12:37:42,670 root INFO creating /var/tmp/portage/dev-python/numcodecs-0.12.1-r1/work/numcodecs-0.12.1-python3_11/build/temp.linux-x86_64-cpython-311/numcodecs 2024-02-09 12:37:42,765 root INFO x86_64-pc-linux-gnu-gcc -Wsign-compare -DNDEBUG -march=native -O2 -pipe -fPIC -I/usr/include/python3.11 -c numcodecs/_shuffle.c -o /var/tmp/portage/dev-python/numcodecs-0.12.1-r1/work/numcodecs-0.12.1-python3_11/build/temp.linux-x86_64-cpython-311/numcodecs/_shuffle.o 2024-02-09 12:37:42,796 root INFO building 'numcodecs.compat_ext' extension 2024-02-09 12:37:42,797 root INFO x86_64-pc-linux-gnu-gcc -Wsign-compare -DNDEBUG -march=native -O2 -pipe -fPIC -I/usr/include/python3.11 -c numcodecs/compat_ext.c -o /var/tmp/portage/dev-python/numcodecs-0.12.1-r1/work/numcodecs-0.12.1-python3_11/build/temp.linux-x86_64-cpython-311/numcodecs/compat_ext.o 2024-02-09 12:37:43,422 root INFO building 'numcodecs.fletcher32' extension 2024-02-09 12:37:43,423 root INFO x86_64-pc-linux-gnu-gcc -Wsign-compare -DNDEBUG -march=native -O2 -pipe -fPIC -Inumcodecs -I/usr/include/python3.11 -c numcodecs/fletcher32.c -o /var/tmp/portage/dev-python/numcodecs-0.12.1-r1/work/numcodecs-0.12.1-python3_11/build/temp.linux-x86_64-cpython-311/numcodecs/fletcher32.o 2024-02-09 12:37:43,423 root INFO building 'numcodecs.jenkins' extension 2024-02-09 12:37:43,424 root INFO x86_64-pc-linux-gnu-gcc -Wsign-compare -DNDEBUG -march=native -O2 -pipe -fPIC -DCYTHON_TRACE=1 -Inumcodecs -I/usr/include/python3.11 -c numcodecs/jenkins.c -o /var/tmp/portage/dev-python/numcodecs-0.12.1-r1/work/numcodecs-0.12.1-python3_11/build/temp.linux-x86_64-cpython-311/numcodecs/jenkins.o 2024-02-09 12:37:43,525 root INFO x86_64-pc-linux-gnu-gcc -shared -Wl,-O1 -Wl,--as-needed -march=native -O2 -pipe /var/tmp/portage/dev-python/numcodecs-0.12.1-r1/work/numcodecs-0.12.1-python3_11/build/temp.linux-x86_64-cpython-311/numcodecs/compat_ext.o -L/usr/lib64 -o /var/tmp/portage/dev-python/numcodecs-0.12.1-r1/work/numcodecs-0.12.1-python3_11/build/lib.linux-x86_64-cpython-311/numcodecs/compat_ext.cpython-311-x86_64-linux-gnu.so Compiling numcodecs/zstd.pyx because it changed. [1/1] Cythonizing numcodecs/zstd.pyx Compiling numcodecs/lz4.pyx because it changed. [1/1] Cythonizing numcodecs/lz4.pyx Compiling numcodecs/blosc.pyx because it changed. [1/1] Cythonizing numcodecs/blosc.pyx 2024-02-09 12:37:44,004 root INFO building 'numcodecs.lz4' extension 2024-02-09 12:37:44,005 root INFO creating /var/tmp/portage/dev-python/numcodecs-0.12.1-r1/work/numcodecs-0.12.1-python3_11/build/temp.linux-x86_64-cpython-311/c-blosc 2024-02-09 12:37:44,006 root INFO creating /var/tmp/portage/dev-python/numcodecs-0.12.1-r1/work/numcodecs-0.12.1-python3_11/build/temp.linux-x86_64-cpython-311/c-blosc/internal-complibs 2024-02-09 12:37:44,006 root INFO creating /var/tmp/portage/dev-python/numcodecs-0.12.1-r1/work/numcodecs-0.12.1-python3_11/build/temp.linux-x86_64-cpython-311/c-blosc/internal-complibs/lz4-1.9.3 2024-02-09 12:37:44,018 root INFO x86_64-pc-linux-gnu-gcc -Wsign-compare -DNDEBUG -march=native -O2 -pipe -fPIC -Ic-blosc/internal-complibs/lz4-1.9.3 -Inumcodecs -I/usr/include/python3.11 -c c-blosc/internal-complibs/lz4-1.9.3/lz4.c -o /var/tmp/portage/dev-python/numcodecs-0.12.1-r1/work/numcodecs-0.12.1-python3_11/build/temp.linux-x86_64-cpython-311/c-blosc/internal-complibs/lz4-1.9.3/lz4.o 2024-02-09 12:37:44,349 root INFO building 'numcodecs.zstd' extension 2024-02-09 12:37:44,355 root INFO creating /var/tmp/portage/dev-python/numcodecs-0.12.1-r1/work/numcodecs-0.12.1-python3_11/build/temp.linux-x86_64-cpython-311/c-blosc/internal-complibs/zstd-1.4.8 2024-02-09 12:37:44,355 root INFO creating /var/tmp/portage/dev-python/numcodecs-0.12.1-r1/work/numcodecs-0.12.1-python3_11/build/temp.linux-x86_64-cpython-311/c-blosc/internal-complibs/zstd-1.4.8/common 2024-02-09 12:37:44,357 root INFO creating /var/tmp/portage/dev-python/numcodecs-0.12.1-r1/work/numcodecs-0.12.1-python3_11/build/temp.linux-x86_64-cpython-311/c-blosc/internal-complibs/zstd-1.4.8/compress 2024-02-09 12:37:44,358 root INFO creating /var/tmp/portage/dev-python/numcodecs-0.12.1-r1/work/numcodecs-0.12.1-python3_11/build/temp.linux-x86_64-cpython-311/c-blosc/internal-complibs/zstd-1.4.8/decompress 2024-02-09 12:37:44,359 root INFO creating /var/tmp/portage/dev-python/numcodecs-0.12.1-r1/work/numcodecs-0.12.1-python3_11/build/temp.linux-x86_64-cpython-311/c-blosc/internal-complibs/zstd-1.4.8/dictBuilder 2024-02-09 12:37:44,360 root INFO x86_64-pc-linux-gnu-gcc -Wsign-compare -DNDEBUG -march=native -O2 -pipe -fPIC -Ic-blosc/internal-complibs/zstd-1.4.8 -Ic-blosc/internal-complibs/zstd-1.4.8/decompress -Ic-blosc/internal-complibs/zstd-1.4.8/compress -Ic-blosc/internal-complibs/zstd-1.4.8/legacy -Ic-blosc/internal-complibs/zstd-1.4.8/deprecated -Ic-blosc/internal-complibs/zstd-1.4.8/dictBuilder -Ic-blosc/internal-complibs/zstd-1.4.8/common -Ic-blosc/internal-complibs/zstd-1.4.8/dll -I/usr/include/python3.11 -c c-blosc/internal-complibs/zstd-1.4.8/common/debug.c -o /var/tmp/portage/dev-python/numcodecs-0.12.1-r1/work/numcodecs-0.12.1-python3_11/build/temp.linux-x86_64-cpython-311/c-blosc/internal-complibs/zstd-1.4.8/common/debug.o 2024-02-09 12:37:44,361 root INFO building 'numcodecs.blosc' extension 2024-02-09 12:37:44,362 root INFO creating /var/tmp/portage/dev-python/numcodecs-0.12.1-r1/work/numcodecs-0.12.1-python3_11/build/temp.linux-x86_64-cpython-311/c-blosc/blosc 2024-02-09 12:37:44,369 root INFO creating /var/tmp/portage/dev-python/numcodecs-0.12.1-r1/work/numcodecs-0.12.1-python3_11/build/temp.linux-x86_64-cpython-311/c-blosc/internal-complibs/zlib-1.2.8 2024-02-09 12:37:44,372 root INFO x86_64-pc-linux-gnu-gcc -Wsign-compare -DNDEBUG -march=native -O2 -pipe -fPIC -DHAVE_LZ4=1 -DHAVE_ZLIB=1 -DHAVE_ZSTD=1 -Ic-blosc/blosc -Ic-blosc/internal-complibs/zstd-1.4.8 -Ic-blosc/internal-complibs/zlib-1.2.8 -Ic-blosc/internal-complibs/lz4-1.9.3 -Ic-blosc/internal-complibs/zstd-1.4.8/decompress -Ic-blosc/internal-complibs/zstd-1.4.8/compress -Ic-blosc/internal-complibs/zstd-1.4.8/legacy -Ic-blosc/internal-complibs/zstd-1.4.8/deprecated -Ic-blosc/internal-complibs/zstd-1.4.8/dictBuilder -Ic-blosc/internal-complibs/zstd-1.4.8/common -Ic-blosc/internal-complibs/zstd-1.4.8/dll -Ic-blosc/internal-complibs/zstd-1.4.8/dll/example -I/usr/include/python3.11 -c c-blosc/blosc/bitshuffle-avx2.c -o /var/tmp/portage/dev-python/numcodecs-0.12.1-r1/work/numcodecs-0.12.1-python3_11/build/temp.linux-x86_64-cpython-311/c-blosc/blosc/bitshuffle-avx2.o -DSHUFFLE_AVX2_ENABLED 2024-02-09 12:37:44,385 root INFO x86_64-pc-linux-gnu-gcc -Wsign-compare -DNDEBUG -march=native -O2 -pipe -fPIC -Ic-blosc/internal-complibs/zstd-1.4.8 -Ic-blosc/internal-complibs/zstd-1.4.8/decompress -Ic-blosc/internal-complibs/zstd-1.4.8/compress -Ic-blosc/internal-complibs/zstd-1.4.8/legacy -Ic-blosc/internal-complibs/zstd-1.4.8/deprecated -Ic-blosc/internal-complibs/zstd-1.4.8/dictBuilder -Ic-blosc/internal-complibs/zstd-1.4.8/common -Ic-blosc/internal-complibs/zstd-1.4.8/dll -I/usr/include/python3.11 -c c-blosc/internal-complibs/zstd-1.4.8/common/entropy_common.c -o /var/tmp/portage/dev-python/numcodecs-0.12.1-r1/work/numcodecs-0.12.1-python3_11/build/temp.linux-x86_64-cpython-311/c-blosc/internal-complibs/zstd-1.4.8/common/entropy_common.o 2024-02-09 12:37:45,339 root INFO x86_64-pc-linux-gnu-gcc -Wsign-compare -DNDEBUG -march=native -O2 -pipe -fPIC -DHAVE_LZ4=1 -DHAVE_ZLIB=1 -DHAVE_ZSTD=1 -Ic-blosc/blosc -Ic-blosc/internal-complibs/zstd-1.4.8 -Ic-blosc/internal-complibs/zlib-1.2.8 -Ic-blosc/internal-complibs/lz4-1.9.3 -Ic-blosc/internal-complibs/zstd-1.4.8/decompress -Ic-blosc/internal-complibs/zstd-1.4.8/compress -Ic-blosc/internal-complibs/zstd-1.4.8/legacy -Ic-blosc/internal-complibs/zstd-1.4.8/deprecated -Ic-blosc/internal-complibs/zstd-1.4.8/dictBuilder -Ic-blosc/internal-complibs/zstd-1.4.8/common -Ic-blosc/internal-complibs/zstd-1.4.8/dll -Ic-blosc/internal-complibs/zstd-1.4.8/dll/example -I/usr/include/python3.11 -c c-blosc/blosc/bitshuffle-generic.c -o /var/tmp/portage/dev-python/numcodecs-0.12.1-r1/work/numcodecs-0.12.1-python3_11/build/temp.linux-x86_64-cpython-311/c-blosc/blosc/bitshuffle-generic.o -DSHUFFLE_AVX2_ENABLED 2024-02-09 12:37:45,340 root INFO x86_64-pc-linux-gnu-gcc -Wsign-compare -DNDEBUG -march=native -O2 -pipe -fPIC -Ic-blosc/internal-complibs/zstd-1.4.8 -Ic-blosc/internal-complibs/zstd-1.4.8/decompress -Ic-blosc/internal-complibs/zstd-1.4.8/compress -Ic-blosc/internal-complibs/zstd-1.4.8/legacy -Ic-blosc/internal-complibs/zstd-1.4.8/deprecated -Ic-blosc/internal-complibs/zstd-1.4.8/dictBuilder -Ic-blosc/internal-complibs/zstd-1.4.8/common -Ic-blosc/internal-complibs/zstd-1.4.8/dll -I/usr/include/python3.11 -c c-blosc/internal-complibs/zstd-1.4.8/common/error_private.c -o /var/tmp/portage/dev-python/numcodecs-0.12.1-r1/work/numcodecs-0.12.1-python3_11/build/temp.linux-x86_64-cpython-311/c-blosc/internal-complibs/zstd-1.4.8/common/error_private.o 2024-02-09 12:37:45,406 root INFO x86_64-pc-linux-gnu-gcc -Wsign-compare -DNDEBUG -march=native -O2 -pipe -fPIC -Ic-blosc/internal-complibs/zstd-1.4.8 -Ic-blosc/internal-complibs/zstd-1.4.8/decompress -Ic-blosc/internal-complibs/zstd-1.4.8/compress -Ic-blosc/internal-complibs/zstd-1.4.8/legacy -Ic-blosc/internal-complibs/zstd-1.4.8/deprecated -Ic-blosc/internal-complibs/zstd-1.4.8/dictBuilder -Ic-blosc/internal-complibs/zstd-1.4.8/common -Ic-blosc/internal-complibs/zstd-1.4.8/dll -I/usr/include/python3.11 -c c-blosc/internal-complibs/zstd-1.4.8/common/fse_decompress.c -o /var/tmp/portage/dev-python/numcodecs-0.12.1-r1/work/numcodecs-0.12.1-python3_11/build/temp.linux-x86_64-cpython-311/c-blosc/internal-complibs/zstd-1.4.8/common/fse_decompress.o 2024-02-09 12:37:46,002 root INFO x86_64-pc-linux-gnu-gcc -Wsign-compare -DNDEBUG -march=native -O2 -pipe -fPIC -DHAVE_LZ4=1 -DHAVE_ZLIB=1 -DHAVE_ZSTD=1 -Ic-blosc/blosc -Ic-blosc/internal-complibs/zstd-1.4.8 -Ic-blosc/internal-complibs/zlib-1.2.8 -Ic-blosc/internal-complibs/lz4-1.9.3 -Ic-blosc/internal-complibs/zstd-1.4.8/decompress -Ic-blosc/internal-complibs/zstd-1.4.8/compress -Ic-blosc/internal-complibs/zstd-1.4.8/legacy -Ic-blosc/internal-complibs/zstd-1.4.8/deprecated -Ic-blosc/internal-complibs/zstd-1.4.8/dictBuilder -Ic-blosc/internal-complibs/zstd-1.4.8/common -Ic-blosc/internal-complibs/zstd-1.4.8/dll -Ic-blosc/internal-complibs/zstd-1.4.8/dll/example -I/usr/include/python3.11 -c c-blosc/blosc/blosc.c -o /var/tmp/portage/dev-python/numcodecs-0.12.1-r1/work/numcodecs-0.12.1-python3_11/build/temp.linux-x86_64-cpython-311/c-blosc/blosc/blosc.o -DSHUFFLE_AVX2_ENABLED c-blosc/blosc/blosc.c: In function ‘blosc_d’: c-blosc/blosc/blosc.c:763:38: warning: comparison of integer expressions of different signedness: ‘int32_t’ {aka ‘int’} and ‘long unsigned int’ [-Wsign-compare] 763 | if (src_offset < 0 || src_offset > compressedsize - sizeof(int32_t)) { | ^ c-blosc/blosc/blosc.c: In function ‘compute_blocksize’: c-blosc/blosc/blosc.c:985:19: warning: comparison of integer expressions of different signedness: ‘int32_t’ {aka ‘int’} and ‘long unsigned int’ [-Wsign-compare] 985 | if (blocksize > BLOSC_MAX_BLOCKSIZE) { | ^ c-blosc/blosc/blosc.c: In function ‘blosc_run_decompression_with_context’: c-blosc/blosc/blosc.c:1458:53: warning: comparison of integer expressions of different signedness: ‘int32_t’ {aka ‘int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 1458 | if (context->blocksize <= 0 || context->blocksize > destsize || | ^ c-blosc/blosc/blosc.c:1459:26: warning: comparison of integer expressions of different signedness: ‘int32_t’ {aka ‘int’} and ‘long unsigned int’ [-Wsign-compare] 1459 | context->blocksize > BLOSC_MAX_BLOCKSIZE || context->typesize <= 0 || | ^ c-blosc/blosc/blosc.c: In function ‘blosc_getitem’: c-blosc/blosc/blosc.c:1596:57: warning: comparison of integer expressions of different signedness: ‘int32_t’ {aka ‘int’} and ‘long unsigned int’ [-Wsign-compare] 1596 | if (blocksize <= 0 || blocksize > nbytes || blocksize > BLOSC_MAX_BLOCKSIZE || | ^ 2024-02-09 12:37:46,786 root INFO x86_64-pc-linux-gnu-gcc -Wsign-compare -DNDEBUG -march=native -O2 -pipe -fPIC -Ic-blosc/internal-complibs/zstd-1.4.8 -Ic-blosc/internal-complibs/zstd-1.4.8/decompress -Ic-blosc/internal-complibs/zstd-1.4.8/compress -Ic-blosc/internal-complibs/zstd-1.4.8/legacy -Ic-blosc/internal-complibs/zstd-1.4.8/deprecated -Ic-blosc/internal-complibs/zstd-1.4.8/dictBuilder -Ic-blosc/internal-complibs/zstd-1.4.8/common -Ic-blosc/internal-complibs/zstd-1.4.8/dll -I/usr/include/python3.11 -c c-blosc/internal-complibs/zstd-1.4.8/common/pool.c -o /var/tmp/portage/dev-python/numcodecs-0.12.1-r1/work/numcodecs-0.12.1-python3_11/build/temp.linux-x86_64-cpython-311/c-blosc/internal-complibs/zstd-1.4.8/common/pool.o Compiling numcodecs/vlen.pyx because it changed. [1/1] Cythonizing numcodecs/vlen.pyx 2024-02-09 12:37:46,988 root INFO building 'numcodecs.vlen' extension 2024-02-09 12:37:46,989 root INFO x86_64-pc-linux-gnu-gcc -Wsign-compare -DNDEBUG -march=native -O2 -pipe -fPIC -Inumcodecs -I/usr/include/python3.11 -c numcodecs/vlen.c -o /var/tmp/portage/dev-python/numcodecs-0.12.1-r1/work/numcodecs-0.12.1-python3_11/build/temp.linux-x86_64-cpython-311/numcodecs/vlen.o 2024-02-09 12:37:47,116 root INFO x86_64-pc-linux-gnu-gcc -Wsign-compare -DNDEBUG -march=native -O2 -pipe -fPIC -DHAVE_LZ4=1 -DHAVE_ZLIB=1 -DHAVE_ZSTD=1 -Ic-blosc/blosc -Ic-blosc/internal-complibs/zstd-1.4.8 -Ic-blosc/internal-complibs/zlib-1.2.8 -Ic-blosc/internal-complibs/lz4-1.9.3 -Ic-blosc/internal-complibs/zstd-1.4.8/decompress -Ic-blosc/internal-complibs/zstd-1.4.8/compress -Ic-blosc/internal-complibs/zstd-1.4.8/legacy -Ic-blosc/internal-complibs/zstd-1.4.8/deprecated -Ic-blosc/internal-complibs/zstd-1.4.8/dictBuilder -Ic-blosc/internal-complibs/zstd-1.4.8/common -Ic-blosc/internal-complibs/zstd-1.4.8/dll -Ic-blosc/internal-complibs/zstd-1.4.8/dll/example -I/usr/include/python3.11 -c c-blosc/blosc/blosclz.c -o /var/tmp/portage/dev-python/numcodecs-0.12.1-r1/work/numcodecs-0.12.1-python3_11/build/temp.linux-x86_64-cpython-311/c-blosc/blosc/blosclz.o -DSHUFFLE_AVX2_ENABLED 2024-02-09 12:37:47,600 root INFO x86_64-pc-linux-gnu-gcc -Wsign-compare -DNDEBUG -march=native -O2 -pipe -fPIC -Ic-blosc/internal-complibs/lz4-1.9.3 -Inumcodecs -I/usr/include/python3.11 -c c-blosc/internal-complibs/lz4-1.9.3/lz4hc.c -o /var/tmp/portage/dev-python/numcodecs-0.12.1-r1/work/numcodecs-0.12.1-python3_11/build/temp.linux-x86_64-cpython-311/c-blosc/internal-complibs/lz4-1.9.3/lz4hc.o 2024-02-09 12:37:47,650 root INFO x86_64-pc-linux-gnu-gcc -Wsign-compare -DNDEBUG -march=native -O2 -pipe -fPIC -Ic-blosc/internal-complibs/zstd-1.4.8 -Ic-blosc/internal-complibs/zstd-1.4.8/decompress -Ic-blosc/internal-complibs/zstd-1.4.8/compress -Ic-blosc/internal-complibs/zstd-1.4.8/legacy -Ic-blosc/internal-complibs/zstd-1.4.8/deprecated -Ic-blosc/internal-complibs/zstd-1.4.8/dictBuilder -Ic-blosc/internal-complibs/zstd-1.4.8/common -Ic-blosc/internal-complibs/zstd-1.4.8/dll -I/usr/include/python3.11 -c c-blosc/internal-complibs/zstd-1.4.8/common/threading.c -o /var/tmp/portage/dev-python/numcodecs-0.12.1-r1/work/numcodecs-0.12.1-python3_11/build/temp.linux-x86_64-cpython-311/c-blosc/internal-complibs/zstd-1.4.8/common/threading.o c-blosc/blosc/blosclz.c: In function ‘blosclz_compress’: c-blosc/blosc/blosclz.c:643:39: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 643 | unsigned minlen = (clevel == 9) ? ipshift : minlen_[clevel]; | ^~~~~~~ 2024-02-09 12:37:47,681 root INFO x86_64-pc-linux-gnu-gcc -Wsign-compare -DNDEBUG -march=native -O2 -pipe -fPIC -Ic-blosc/internal-complibs/zstd-1.4.8 -Ic-blosc/internal-complibs/zstd-1.4.8/decompress -Ic-blosc/internal-complibs/zstd-1.4.8/compress -Ic-blosc/internal-complibs/zstd-1.4.8/legacy -Ic-blosc/internal-complibs/zstd-1.4.8/deprecated -Ic-blosc/internal-complibs/zstd-1.4.8/dictBuilder -Ic-blosc/internal-complibs/zstd-1.4.8/common -Ic-blosc/internal-complibs/zstd-1.4.8/dll -I/usr/include/python3.11 -c c-blosc/internal-complibs/zstd-1.4.8/common/xxhash.c -o /var/tmp/portage/dev-python/numcodecs-0.12.1-r1/work/numcodecs-0.12.1-python3_11/build/temp.linux-x86_64-cpython-311/c-blosc/internal-complibs/zstd-1.4.8/common/xxhash.o 2024-02-09 12:37:47,825 root INFO x86_64-pc-linux-gnu-gcc -shared -Wl,-O1 -Wl,--as-needed -march=native -O2 -pipe /var/tmp/portage/dev-python/numcodecs-0.12.1-r1/work/numcodecs-0.12.1-python3_11/build/temp.linux-x86_64-cpython-311/numcodecs/_shuffle.o -L/usr/lib64 -o /var/tmp/portage/dev-python/numcodecs-0.12.1-r1/work/numcodecs-0.12.1-python3_11/build/lib.linux-x86_64-cpython-311/numcodecs/_shuffle.cpython-311-x86_64-linux-gnu.so 2024-02-09 12:37:47,891 root INFO x86_64-pc-linux-gnu-gcc -Wsign-compare -DNDEBUG -march=native -O2 -pipe -fPIC -DHAVE_LZ4=1 -DHAVE_ZLIB=1 -DHAVE_ZSTD=1 -Ic-blosc/blosc -Ic-blosc/internal-complibs/zstd-1.4.8 -Ic-blosc/internal-complibs/zlib-1.2.8 -Ic-blosc/internal-complibs/lz4-1.9.3 -Ic-blosc/internal-complibs/zstd-1.4.8/decompress -Ic-blosc/internal-complibs/zstd-1.4.8/compress -Ic-blosc/internal-complibs/zstd-1.4.8/legacy -Ic-blosc/internal-complibs/zstd-1.4.8/deprecated -Ic-blosc/internal-complibs/zstd-1.4.8/dictBuilder -Ic-blosc/internal-complibs/zstd-1.4.8/common -Ic-blosc/internal-complibs/zstd-1.4.8/dll -Ic-blosc/internal-complibs/zstd-1.4.8/dll/example -I/usr/include/python3.11 -c c-blosc/blosc/fastcopy.c -o /var/tmp/portage/dev-python/numcodecs-0.12.1-r1/work/numcodecs-0.12.1-python3_11/build/temp.linux-x86_64-cpython-311/c-blosc/blosc/fastcopy.o -DSHUFFLE_AVX2_ENABLED 2024-02-09 12:37:48,043 root INFO x86_64-pc-linux-gnu-gcc -Wsign-compare -DNDEBUG -march=native -O2 -pipe -fPIC -Ic-blosc/internal-complibs/zstd-1.4.8 -Ic-blosc/internal-complibs/zstd-1.4.8/decompress -Ic-blosc/internal-complibs/zstd-1.4.8/compress -Ic-blosc/internal-complibs/zstd-1.4.8/legacy -Ic-blosc/internal-complibs/zstd-1.4.8/deprecated -Ic-blosc/internal-complibs/zstd-1.4.8/dictBuilder -Ic-blosc/internal-complibs/zstd-1.4.8/common -Ic-blosc/internal-complibs/zstd-1.4.8/dll -I/usr/include/python3.11 -c c-blosc/internal-complibs/zstd-1.4.8/common/zstd_common.c -o /var/tmp/portage/dev-python/numcodecs-0.12.1-r1/work/numcodecs-0.12.1-python3_11/build/temp.linux-x86_64-cpython-311/c-blosc/internal-complibs/zstd-1.4.8/common/zstd_common.o 2024-02-09 12:37:48,462 root INFO x86_64-pc-linux-gnu-gcc -Wsign-compare -DNDEBUG -march=native -O2 -pipe -fPIC -DHAVE_LZ4=1 -DHAVE_ZLIB=1 -DHAVE_ZSTD=1 -Ic-blosc/blosc -Ic-blosc/internal-complibs/zstd-1.4.8 -Ic-blosc/internal-complibs/zlib-1.2.8 -Ic-blosc/internal-complibs/lz4-1.9.3 -Ic-blosc/internal-complibs/zstd-1.4.8/decompress -Ic-blosc/internal-complibs/zstd-1.4.8/compress -Ic-blosc/internal-complibs/zstd-1.4.8/legacy -Ic-blosc/internal-complibs/zstd-1.4.8/deprecated -Ic-blosc/internal-complibs/zstd-1.4.8/dictBuilder -Ic-blosc/internal-complibs/zstd-1.4.8/common -Ic-blosc/internal-complibs/zstd-1.4.8/dll -Ic-blosc/internal-complibs/zstd-1.4.8/dll/example -I/usr/include/python3.11 -c c-blosc/blosc/shuffle-avx2.c -o /var/tmp/portage/dev-python/numcodecs-0.12.1-r1/work/numcodecs-0.12.1-python3_11/build/temp.linux-x86_64-cpython-311/c-blosc/blosc/shuffle-avx2.o -DSHUFFLE_AVX2_ENABLED 2024-02-09 12:37:48,762 root INFO x86_64-pc-linux-gnu-gcc -shared -Wl,-O1 -Wl,--as-needed -march=native -O2 -pipe /var/tmp/portage/dev-python/numcodecs-0.12.1-r1/work/numcodecs-0.12.1-python3_11/build/temp.linux-x86_64-cpython-311/numcodecs/jenkins.o -L/usr/lib64 -o /var/tmp/portage/dev-python/numcodecs-0.12.1-r1/work/numcodecs-0.12.1-python3_11/build/lib.linux-x86_64-cpython-311/numcodecs/jenkins.cpython-311-x86_64-linux-gnu.so 2024-02-09 12:37:48,811 root INFO x86_64-pc-linux-gnu-gcc -shared -Wl,-O1 -Wl,--as-needed -march=native -O2 -pipe /var/tmp/portage/dev-python/numcodecs-0.12.1-r1/work/numcodecs-0.12.1-python3_11/build/temp.linux-x86_64-cpython-311/numcodecs/fletcher32.o -L/usr/lib64 -o /var/tmp/portage/dev-python/numcodecs-0.12.1-r1/work/numcodecs-0.12.1-python3_11/build/lib.linux-x86_64-cpython-311/numcodecs/fletcher32.cpython-311-x86_64-linux-gnu.so 2024-02-09 12:37:48,853 root INFO x86_64-pc-linux-gnu-gcc -Wsign-compare -DNDEBUG -march=native -O2 -pipe -fPIC -Ic-blosc/internal-complibs/zstd-1.4.8 -Ic-blosc/internal-complibs/zstd-1.4.8/decompress -Ic-blosc/internal-complibs/zstd-1.4.8/compress -Ic-blosc/internal-complibs/zstd-1.4.8/legacy -Ic-blosc/internal-complibs/zstd-1.4.8/deprecated -Ic-blosc/internal-complibs/zstd-1.4.8/dictBuilder -Ic-blosc/internal-complibs/zstd-1.4.8/common -Ic-blosc/internal-complibs/zstd-1.4.8/dll -I/usr/include/python3.11 -c c-blosc/internal-complibs/zstd-1.4.8/compress/fse_compress.c -o /var/tmp/portage/dev-python/numcodecs-0.12.1-r1/work/numcodecs-0.12.1-python3_11/build/temp.linux-x86_64-cpython-311/c-blosc/internal-complibs/zstd-1.4.8/compress/fse_compress.o c-blosc/blosc/shuffle-avx2.c: In function ‘shuffle16_tiled_avx2’: c-blosc/blosc/shuffle-avx2.c:285:75: warning: operand of ‘?:’ changes signedness from ‘long long int’ to ‘long unsigned int’ due to unsignedness of other operand [-Wsign-compare] 285 | offset_into_type += (offset_into_type == 0 && vecs_per_el.rem > 0 ? vecs_per_el.rem : sizeof(__m128i))) { | ^~~~~~~~~~~~~~~ c-blosc/blosc/shuffle-avx2.c: In function ‘unshuffle16_tiled_avx2’: c-blosc/blosc/shuffle-avx2.c:542:73: warning: operand of ‘?:’ changes signedness from ‘long long int’ to ‘long unsigned int’ due to unsignedness of other operand [-Wsign-compare] 542 | offset_into_type += (offset_into_type == 0 && vecs_per_el.rem > 0 ? vecs_per_el.rem : sizeof(__m128i))) { | ^~~~~~~~~~~~~~~ 2024-02-09 12:37:49,293 root INFO x86_64-pc-linux-gnu-gcc -Wsign-compare -DNDEBUG -march=native -O2 -pipe -fPIC -DHAVE_LZ4=1 -DHAVE_ZLIB=1 -DHAVE_ZSTD=1 -Ic-blosc/blosc -Ic-blosc/internal-complibs/zstd-1.4.8 -Ic-blosc/internal-complibs/zlib-1.2.8 -Ic-blosc/internal-complibs/lz4-1.9.3 -Ic-blosc/internal-complibs/zstd-1.4.8/decompress -Ic-blosc/internal-complibs/zstd-1.4.8/compress -Ic-blosc/internal-complibs/zstd-1.4.8/legacy -Ic-blosc/internal-complibs/zstd-1.4.8/deprecated -Ic-blosc/internal-complibs/zstd-1.4.8/dictBuilder -Ic-blosc/internal-complibs/zstd-1.4.8/common -Ic-blosc/internal-complibs/zstd-1.4.8/dll -Ic-blosc/internal-complibs/zstd-1.4.8/dll/example -I/usr/include/python3.11 -c c-blosc/blosc/shuffle-generic.c -o /var/tmp/portage/dev-python/numcodecs-0.12.1-r1/work/numcodecs-0.12.1-python3_11/build/temp.linux-x86_64-cpython-311/c-blosc/blosc/shuffle-generic.o -DSHUFFLE_AVX2_ENABLED 2024-02-09 12:37:49,599 root INFO x86_64-pc-linux-gnu-gcc -Wsign-compare -DNDEBUG -march=native -O2 -pipe -fPIC -Ic-blosc/internal-complibs/zstd-1.4.8 -Ic-blosc/internal-complibs/zstd-1.4.8/decompress -Ic-blosc/internal-complibs/zstd-1.4.8/compress -Ic-blosc/internal-complibs/zstd-1.4.8/legacy -Ic-blosc/internal-complibs/zstd-1.4.8/deprecated -Ic-blosc/internal-complibs/zstd-1.4.8/dictBuilder -Ic-blosc/internal-complibs/zstd-1.4.8/common -Ic-blosc/internal-complibs/zstd-1.4.8/dll -I/usr/include/python3.11 -c c-blosc/internal-complibs/zstd-1.4.8/compress/hist.c -o /var/tmp/portage/dev-python/numcodecs-0.12.1-r1/work/numcodecs-0.12.1-python3_11/build/temp.linux-x86_64-cpython-311/c-blosc/internal-complibs/zstd-1.4.8/compress/hist.o 2024-02-09 12:37:49,689 root INFO x86_64-pc-linux-gnu-gcc -Wsign-compare -DNDEBUG -march=native -O2 -pipe -fPIC -Ic-blosc/internal-complibs/zstd-1.4.8 -Ic-blosc/internal-complibs/zstd-1.4.8/decompress -Ic-blosc/internal-complibs/zstd-1.4.8/compress -Ic-blosc/internal-complibs/zstd-1.4.8/legacy -Ic-blosc/internal-complibs/zstd-1.4.8/deprecated -Ic-blosc/internal-complibs/zstd-1.4.8/dictBuilder -Ic-blosc/internal-complibs/zstd-1.4.8/common -Ic-blosc/internal-complibs/zstd-1.4.8/dll -I/usr/include/python3.11 -c c-blosc/internal-complibs/zstd-1.4.8/compress/huf_compress.c -o /var/tmp/portage/dev-python/numcodecs-0.12.1-r1/work/numcodecs-0.12.1-python3_11/build/temp.linux-x86_64-cpython-311/c-blosc/internal-complibs/zstd-1.4.8/compress/huf_compress.o 2024-02-09 12:37:49,783 root INFO x86_64-pc-linux-gnu-gcc -Wsign-compare -DNDEBUG -march=native -O2 -pipe -fPIC -DHAVE_LZ4=1 -DHAVE_ZLIB=1 -DHAVE_ZSTD=1 -Ic-blosc/blosc -Ic-blosc/internal-complibs/zstd-1.4.8 -Ic-blosc/internal-complibs/zlib-1.2.8 -Ic-blosc/internal-complibs/lz4-1.9.3 -Ic-blosc/internal-complibs/zstd-1.4.8/decompress -Ic-blosc/internal-complibs/zstd-1.4.8/compress -Ic-blosc/internal-complibs/zstd-1.4.8/legacy -Ic-blosc/internal-complibs/zstd-1.4.8/deprecated -Ic-blosc/internal-complibs/zstd-1.4.8/dictBuilder -Ic-blosc/internal-complibs/zstd-1.4.8/common -Ic-blosc/internal-complibs/zstd-1.4.8/dll -Ic-blosc/internal-complibs/zstd-1.4.8/dll/example -I/usr/include/python3.11 -c c-blosc/blosc/shuffle.c -o /var/tmp/portage/dev-python/numcodecs-0.12.1-r1/work/numcodecs-0.12.1-python3_11/build/temp.linux-x86_64-cpython-311/c-blosc/blosc/shuffle.o -DSHUFFLE_AVX2_ENABLED 2024-02-09 12:37:50,297 root INFO x86_64-pc-linux-gnu-gcc -Wsign-compare -DNDEBUG -march=native -O2 -pipe -fPIC -DHAVE_LZ4=1 -DHAVE_ZLIB=1 -DHAVE_ZSTD=1 -Ic-blosc/blosc -Ic-blosc/internal-complibs/zstd-1.4.8 -Ic-blosc/internal-complibs/zlib-1.2.8 -Ic-blosc/internal-complibs/lz4-1.9.3 -Ic-blosc/internal-complibs/zstd-1.4.8/decompress -Ic-blosc/internal-complibs/zstd-1.4.8/compress -Ic-blosc/internal-complibs/zstd-1.4.8/legacy -Ic-blosc/internal-complibs/zstd-1.4.8/deprecated -Ic-blosc/internal-complibs/zstd-1.4.8/dictBuilder -Ic-blosc/internal-complibs/zstd-1.4.8/common -Ic-blosc/internal-complibs/zstd-1.4.8/dll -Ic-blosc/internal-complibs/zstd-1.4.8/dll/example -I/usr/include/python3.11 -c c-blosc/internal-complibs/lz4-1.9.3/lz4.c -o /var/tmp/portage/dev-python/numcodecs-0.12.1-r1/work/numcodecs-0.12.1-python3_11/build/temp.linux-x86_64-cpython-311/c-blosc/internal-complibs/lz4-1.9.3/lz4.o -DSHUFFLE_AVX2_ENABLED 2024-02-09 12:37:50,445 root INFO x86_64-pc-linux-gnu-gcc -Wsign-compare -DNDEBUG -march=native -O2 -pipe -fPIC -Ic-blosc/internal-complibs/zstd-1.4.8 -Ic-blosc/internal-complibs/zstd-1.4.8/decompress -Ic-blosc/internal-complibs/zstd-1.4.8/compress -Ic-blosc/internal-complibs/zstd-1.4.8/legacy -Ic-blosc/internal-complibs/zstd-1.4.8/deprecated -Ic-blosc/internal-complibs/zstd-1.4.8/dictBuilder -Ic-blosc/internal-complibs/zstd-1.4.8/common -Ic-blosc/internal-complibs/zstd-1.4.8/dll -I/usr/include/python3.11 -c c-blosc/internal-complibs/zstd-1.4.8/compress/zstd_compress.c -o /var/tmp/portage/dev-python/numcodecs-0.12.1-r1/work/numcodecs-0.12.1-python3_11/build/temp.linux-x86_64-cpython-311/c-blosc/internal-complibs/zstd-1.4.8/compress/zstd_compress.o 2024-02-09 12:37:50,680 root INFO x86_64-pc-linux-gnu-gcc -Wsign-compare -DNDEBUG -march=native -O2 -pipe -fPIC -Ic-blosc/internal-complibs/lz4-1.9.3 -Inumcodecs -I/usr/include/python3.11 -c numcodecs/lz4.c -o /var/tmp/portage/dev-python/numcodecs-0.12.1-r1/work/numcodecs-0.12.1-python3_11/build/temp.linux-x86_64-cpython-311/numcodecs/lz4.o numcodecs/lz4.c: In function ‘__pyx_pf_9numcodecs_3lz4_2decompress’: numcodecs/lz4.c:3692:38: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare] 3692 | __pyx_t_5 = (__pyx_v_source_size < (sizeof(uint32_t))); | ^ numcodecs/lz4.c:3893:48: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 3893 | __pyx_t_5 = (__pyx_v_dest_buffer->nbytes < __pyx_v_dest_size); | ^ 2024-02-09 12:37:52,241 root INFO x86_64-pc-linux-gnu-gcc -Wsign-compare -DNDEBUG -march=native -O2 -pipe -fPIC -Ic-blosc/internal-complibs/zstd-1.4.8 -Ic-blosc/internal-complibs/zstd-1.4.8/decompress -Ic-blosc/internal-complibs/zstd-1.4.8/compress -Ic-blosc/internal-complibs/zstd-1.4.8/legacy -Ic-blosc/internal-complibs/zstd-1.4.8/deprecated -Ic-blosc/internal-complibs/zstd-1.4.8/dictBuilder -Ic-blosc/internal-complibs/zstd-1.4.8/common -Ic-blosc/internal-complibs/zstd-1.4.8/dll -I/usr/include/python3.11 -c c-blosc/internal-complibs/zstd-1.4.8/compress/zstd_compress_literals.c -o /var/tmp/portage/dev-python/numcodecs-0.12.1-r1/work/numcodecs-0.12.1-python3_11/build/temp.linux-x86_64-cpython-311/c-blosc/internal-complibs/zstd-1.4.8/compress/zstd_compress_literals.o 2024-02-09 12:37:52,447 root INFO x86_64-pc-linux-gnu-gcc -shared -Wl,-O1 -Wl,--as-needed -march=native -O2 -pipe 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-Ic-blosc/internal-complibs/zstd-1.4.8/dictBuilder -Ic-blosc/internal-complibs/zstd-1.4.8/common -Ic-blosc/internal-complibs/zstd-1.4.8/dll -I/usr/include/python3.11 -c c-blosc/internal-complibs/zstd-1.4.8/compress/zstd_compress_sequences.c -o /var/tmp/portage/dev-python/numcodecs-0.12.1-r1/work/numcodecs-0.12.1-python3_11/build/temp.linux-x86_64-cpython-311/c-blosc/internal-complibs/zstd-1.4.8/compress/zstd_compress_sequences.o 2024-02-09 12:37:53,178 root INFO x86_64-pc-linux-gnu-gcc -Wsign-compare -DNDEBUG -march=native -O2 -pipe -fPIC -DHAVE_LZ4=1 -DHAVE_ZLIB=1 -DHAVE_ZSTD=1 -Ic-blosc/blosc -Ic-blosc/internal-complibs/zstd-1.4.8 -Ic-blosc/internal-complibs/zlib-1.2.8 -Ic-blosc/internal-complibs/lz4-1.9.3 -Ic-blosc/internal-complibs/zstd-1.4.8/decompress -Ic-blosc/internal-complibs/zstd-1.4.8/compress -Ic-blosc/internal-complibs/zstd-1.4.8/legacy -Ic-blosc/internal-complibs/zstd-1.4.8/deprecated -Ic-blosc/internal-complibs/zstd-1.4.8/dictBuilder 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-Ic-blosc/internal-complibs/zstd-1.4.8/compress -Ic-blosc/internal-complibs/zstd-1.4.8/legacy -Ic-blosc/internal-complibs/zstd-1.4.8/deprecated -Ic-blosc/internal-complibs/zstd-1.4.8/dictBuilder -Ic-blosc/internal-complibs/zstd-1.4.8/common -Ic-blosc/internal-complibs/zstd-1.4.8/dll -Ic-blosc/internal-complibs/zstd-1.4.8/dll/example -I/usr/include/python3.11 -c c-blosc/internal-complibs/zstd-1.4.8/decompress/zstd_decompress_block.c -o /var/tmp/portage/dev-python/numcodecs-0.12.1-r1/work/numcodecs-0.12.1-python3_11/build/temp.linux-x86_64-cpython-311/c-blosc/internal-complibs/zstd-1.4.8/decompress/zstd_decompress_block.o -DSHUFFLE_AVX2_ENABLED 2024-02-09 12:38:24,003 root INFO x86_64-pc-linux-gnu-gcc -Wsign-compare -DNDEBUG -march=native -O2 -pipe -fPIC -DHAVE_LZ4=1 -DHAVE_ZLIB=1 -DHAVE_ZSTD=1 -Ic-blosc/blosc -Ic-blosc/internal-complibs/zstd-1.4.8 -Ic-blosc/internal-complibs/zlib-1.2.8 -Ic-blosc/internal-complibs/lz4-1.9.3 -Ic-blosc/internal-complibs/zstd-1.4.8/decompress -Ic-blosc/internal-complibs/zstd-1.4.8/compress -Ic-blosc/internal-complibs/zstd-1.4.8/legacy -Ic-blosc/internal-complibs/zstd-1.4.8/deprecated -Ic-blosc/internal-complibs/zstd-1.4.8/dictBuilder -Ic-blosc/internal-complibs/zstd-1.4.8/common -Ic-blosc/internal-complibs/zstd-1.4.8/dll -Ic-blosc/internal-complibs/zstd-1.4.8/dll/example -I/usr/include/python3.11 -c c-blosc/internal-complibs/zstd-1.4.8/dictBuilder/cover.c -o /var/tmp/portage/dev-python/numcodecs-0.12.1-r1/work/numcodecs-0.12.1-python3_11/build/temp.linux-x86_64-cpython-311/c-blosc/internal-complibs/zstd-1.4.8/dictBuilder/cover.o -DSHUFFLE_AVX2_ENABLED 2024-02-09 12:38:24,684 root INFO x86_64-pc-linux-gnu-gcc -Wsign-compare -DNDEBUG -march=native -O2 -pipe -fPIC -DHAVE_LZ4=1 -DHAVE_ZLIB=1 -DHAVE_ZSTD=1 -Ic-blosc/blosc -Ic-blosc/internal-complibs/zstd-1.4.8 -Ic-blosc/internal-complibs/zlib-1.2.8 -Ic-blosc/internal-complibs/lz4-1.9.3 -Ic-blosc/internal-complibs/zstd-1.4.8/decompress -Ic-blosc/internal-complibs/zstd-1.4.8/compress -Ic-blosc/internal-complibs/zstd-1.4.8/legacy -Ic-blosc/internal-complibs/zstd-1.4.8/deprecated -Ic-blosc/internal-complibs/zstd-1.4.8/dictBuilder -Ic-blosc/internal-complibs/zstd-1.4.8/common -Ic-blosc/internal-complibs/zstd-1.4.8/dll -Ic-blosc/internal-complibs/zstd-1.4.8/dll/example -I/usr/include/python3.11 -c c-blosc/internal-complibs/zstd-1.4.8/dictBuilder/divsufsort.c -o /var/tmp/portage/dev-python/numcodecs-0.12.1-r1/work/numcodecs-0.12.1-python3_11/build/temp.linux-x86_64-cpython-311/c-blosc/internal-complibs/zstd-1.4.8/dictBuilder/divsufsort.o -DSHUFFLE_AVX2_ENABLED 2024-02-09 12:38:25,752 root INFO x86_64-pc-linux-gnu-gcc -Wsign-compare -DNDEBUG -march=native -O2 -pipe -fPIC -DHAVE_LZ4=1 -DHAVE_ZLIB=1 -DHAVE_ZSTD=1 -Ic-blosc/blosc -Ic-blosc/internal-complibs/zstd-1.4.8 -Ic-blosc/internal-complibs/zlib-1.2.8 -Ic-blosc/internal-complibs/lz4-1.9.3 -Ic-blosc/internal-complibs/zstd-1.4.8/decompress -Ic-blosc/internal-complibs/zstd-1.4.8/compress -Ic-blosc/internal-complibs/zstd-1.4.8/legacy -Ic-blosc/internal-complibs/zstd-1.4.8/deprecated -Ic-blosc/internal-complibs/zstd-1.4.8/dictBuilder -Ic-blosc/internal-complibs/zstd-1.4.8/common -Ic-blosc/internal-complibs/zstd-1.4.8/dll -Ic-blosc/internal-complibs/zstd-1.4.8/dll/example -I/usr/include/python3.11 -c c-blosc/internal-complibs/zstd-1.4.8/dictBuilder/fastcover.c -o /var/tmp/portage/dev-python/numcodecs-0.12.1-r1/work/numcodecs-0.12.1-python3_11/build/temp.linux-x86_64-cpython-311/c-blosc/internal-complibs/zstd-1.4.8/dictBuilder/fastcover.o -DSHUFFLE_AVX2_ENABLED 2024-02-09 12:38:26,328 root INFO x86_64-pc-linux-gnu-gcc -Wsign-compare -DNDEBUG -march=native -O2 -pipe -fPIC -DHAVE_LZ4=1 -DHAVE_ZLIB=1 -DHAVE_ZSTD=1 -Ic-blosc/blosc -Ic-blosc/internal-complibs/zstd-1.4.8 -Ic-blosc/internal-complibs/zlib-1.2.8 -Ic-blosc/internal-complibs/lz4-1.9.3 -Ic-blosc/internal-complibs/zstd-1.4.8/decompress -Ic-blosc/internal-complibs/zstd-1.4.8/compress -Ic-blosc/internal-complibs/zstd-1.4.8/legacy -Ic-blosc/internal-complibs/zstd-1.4.8/deprecated -Ic-blosc/internal-complibs/zstd-1.4.8/dictBuilder -Ic-blosc/internal-complibs/zstd-1.4.8/common -Ic-blosc/internal-complibs/zstd-1.4.8/dll -Ic-blosc/internal-complibs/zstd-1.4.8/dll/example -I/usr/include/python3.11 -c c-blosc/internal-complibs/zstd-1.4.8/dictBuilder/zdict.c -o /var/tmp/portage/dev-python/numcodecs-0.12.1-r1/work/numcodecs-0.12.1-python3_11/build/temp.linux-x86_64-cpython-311/c-blosc/internal-complibs/zstd-1.4.8/dictBuilder/zdict.o -DSHUFFLE_AVX2_ENABLED 2024-02-09 12:38:27,102 root INFO x86_64-pc-linux-gnu-gcc -Wsign-compare -DNDEBUG -march=native -O2 -pipe -fPIC -DHAVE_LZ4=1 -DHAVE_ZLIB=1 -DHAVE_ZSTD=1 -Ic-blosc/blosc -Ic-blosc/internal-complibs/zstd-1.4.8 -Ic-blosc/internal-complibs/zlib-1.2.8 -Ic-blosc/internal-complibs/lz4-1.9.3 -Ic-blosc/internal-complibs/zstd-1.4.8/decompress -Ic-blosc/internal-complibs/zstd-1.4.8/compress -Ic-blosc/internal-complibs/zstd-1.4.8/legacy -Ic-blosc/internal-complibs/zstd-1.4.8/deprecated -Ic-blosc/internal-complibs/zstd-1.4.8/dictBuilder -Ic-blosc/internal-complibs/zstd-1.4.8/common -Ic-blosc/internal-complibs/zstd-1.4.8/dll -Ic-blosc/internal-complibs/zstd-1.4.8/dll/example -I/usr/include/python3.11 -c numcodecs/blosc.c -o /var/tmp/portage/dev-python/numcodecs-0.12.1-r1/work/numcodecs-0.12.1-python3_11/build/temp.linux-x86_64-cpython-311/numcodecs/blosc.o -DSHUFFLE_AVX2_ENABLED numcodecs/blosc.c: In function ‘__pyx_pf_9numcodecs_5blosc_24decompress_partial’: numcodecs/blosc.c:7409:38: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 7409 | __pyx_t_5 = (__pyx_v_dest_nbytes < __pyx_v_nitems_bytes); | ^ 2024-02-09 12:38:30,310 root INFO x86_64-pc-linux-gnu-gcc -shared -Wl,-O1 -Wl,--as-needed -march=native -O2 -pipe 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/var/tmp/portage/dev-python/numcodecs-0.12.1-r1/work/numcodecs-0.12.1-python3_11/build/temp.linux-x86_64-cpython-311/c-blosc/internal-complibs/zstd-1.4.8/compress/zstd_compress_superblock.o /var/tmp/portage/dev-python/numcodecs-0.12.1-r1/work/numcodecs-0.12.1-python3_11/build/temp.linux-x86_64-cpython-311/c-blosc/internal-complibs/zstd-1.4.8/compress/zstd_double_fast.o /var/tmp/portage/dev-python/numcodecs-0.12.1-r1/work/numcodecs-0.12.1-python3_11/build/temp.linux-x86_64-cpython-311/c-blosc/internal-complibs/zstd-1.4.8/compress/zstd_fast.o /var/tmp/portage/dev-python/numcodecs-0.12.1-r1/work/numcodecs-0.12.1-python3_11/build/temp.linux-x86_64-cpython-311/c-blosc/internal-complibs/zstd-1.4.8/compress/zstd_lazy.o /var/tmp/portage/dev-python/numcodecs-0.12.1-r1/work/numcodecs-0.12.1-python3_11/build/temp.linux-x86_64-cpython-311/c-blosc/internal-complibs/zstd-1.4.8/compress/zstd_ldm.o /var/tmp/portage/dev-python/numcodecs-0.12.1-r1/work/numcodecs-0.12.1-python3_11/build/temp.linux-x86_64-cpython-311/c-blosc/internal-complibs/zstd-1.4.8/compress/zstd_opt.o /var/tmp/portage/dev-python/numcodecs-0.12.1-r1/work/numcodecs-0.12.1-python3_11/build/temp.linux-x86_64-cpython-311/c-blosc/internal-complibs/zstd-1.4.8/compress/zstdmt_compress.o /var/tmp/portage/dev-python/numcodecs-0.12.1-r1/work/numcodecs-0.12.1-python3_11/build/temp.linux-x86_64-cpython-311/c-blosc/internal-complibs/zstd-1.4.8/decompress/huf_decompress.o /var/tmp/portage/dev-python/numcodecs-0.12.1-r1/work/numcodecs-0.12.1-python3_11/build/temp.linux-x86_64-cpython-311/c-blosc/internal-complibs/zstd-1.4.8/decompress/zstd_ddict.o /var/tmp/portage/dev-python/numcodecs-0.12.1-r1/work/numcodecs-0.12.1-python3_11/build/temp.linux-x86_64-cpython-311/c-blosc/internal-complibs/zstd-1.4.8/decompress/zstd_decompress.o /var/tmp/portage/dev-python/numcodecs-0.12.1-r1/work/numcodecs-0.12.1-python3_11/build/temp.linux-x86_64-cpython-311/c-blosc/internal-complibs/zstd-1.4.8/decompress/zstd_decompress_block.o /var/tmp/portage/dev-python/numcodecs-0.12.1-r1/work/numcodecs-0.12.1-python3_11/build/temp.linux-x86_64-cpython-311/c-blosc/internal-complibs/zstd-1.4.8/dictBuilder/cover.o /var/tmp/portage/dev-python/numcodecs-0.12.1-r1/work/numcodecs-0.12.1-python3_11/build/temp.linux-x86_64-cpython-311/c-blosc/internal-complibs/zstd-1.4.8/dictBuilder/divsufsort.o /var/tmp/portage/dev-python/numcodecs-0.12.1-r1/work/numcodecs-0.12.1-python3_11/build/temp.linux-x86_64-cpython-311/c-blosc/internal-complibs/zstd-1.4.8/dictBuilder/fastcover.o /var/tmp/portage/dev-python/numcodecs-0.12.1-r1/work/numcodecs-0.12.1-python3_11/build/temp.linux-x86_64-cpython-311/c-blosc/internal-complibs/zstd-1.4.8/dictBuilder/zdict.o /var/tmp/portage/dev-python/numcodecs-0.12.1-r1/work/numcodecs-0.12.1-python3_11/build/temp.linux-x86_64-cpython-311/numcodecs/blosc.o -L/usr/lib64 -o /var/tmp/portage/dev-python/numcodecs-0.12.1-r1/work/numcodecs-0.12.1-python3_11/build/lib.linux-x86_64-cpython-311/numcodecs/blosc.cpython-311-x86_64-linux-gnu.so /usr/lib/gcc/x86_64-pc-linux-gnu/13/../../../../x86_64-pc-linux-gnu/bin/ld: /var/tmp/portage/dev-python/numcodecs-0.12.1-r1/work/numcodecs-0.12.1-python3_11/build/temp.linux-x86_64-cpython-311/c-blosc/blosc/bitshuffle-avx2.o: in function `blosc_internal_bshuf_trans_bit_elem_avx2': bitshuffle-avx2.c:(.text+0x5b5): undefined reference to `blosc_internal_bshuf_trans_byte_elem_sse2' /usr/lib/gcc/x86_64-pc-linux-gnu/13/../../../../x86_64-pc-linux-gnu/bin/ld: /var/tmp/portage/dev-python/numcodecs-0.12.1-r1/work/numcodecs-0.12.1-python3_11/build/temp.linux-x86_64-cpython-311/c-blosc/blosc/bitshuffle-avx2.o: in function `bshuf_trans_byte_bitrow_avx2': bitshuffle-avx2.c:(.text+0x578): undefined reference to `blosc_internal_bshuf_trans_byte_bitrow_sse2' /usr/lib/gcc/x86_64-pc-linux-gnu/13/../../../../x86_64-pc-linux-gnu/bin/ld: /var/tmp/portage/dev-python/numcodecs-0.12.1-r1/work/numcodecs-0.12.1-python3_11/build/temp.linux-x86_64-cpython-311/c-blosc/blosc/bitshuffle-avx2.o: in function `blosc_internal_bshuf_untrans_bit_elem_avx2': bitshuffle-avx2.c:(.text+0x788): undefined reference to `blosc_internal_bshuf_shuffle_bit_eightelem_sse2' /usr/lib/gcc/x86_64-pc-linux-gnu/13/../../../../x86_64-pc-linux-gnu/bin/ld: /var/tmp/portage/dev-python/numcodecs-0.12.1-r1/work/numcodecs-0.12.1-python3_11/build/lib.linux-x86_64-cpython-311/numcodecs/blosc.cpython-311-x86_64-linux-gnu.so: hidden symbol `blosc_internal_bshuf_trans_byte_bitrow_sse2' isn't defined /usr/lib/gcc/x86_64-pc-linux-gnu/13/../../../../x86_64-pc-linux-gnu/bin/ld: final link failed: bad value collect2: error: ld returned 1 exit status [numcodecs] command '/usr/bin/x86_64-pc-linux-gnu-gcc' failed with exit code 1 Traceback (most recent call last): File "/usr/lib/python3.11/site-packages/setuptools/_distutils/unixccompiler.py", line 266, in link self.spawn(linker + ld_args) File "/usr/lib/python3.11/site-packages/setuptools/_distutils/ccompiler.py", line 1041, in spawn spawn(cmd, dry_run=self.dry_run, **kwargs) File "/usr/lib/python3.11/site-packages/setuptools/_distutils/spawn.py", line 70, in spawn raise DistutilsExecError( distutils.errors.DistutilsExecError: command '/usr/bin/x86_64-pc-linux-gnu-gcc' failed with exit code 1 During handling of the above exception, another exception occurred: Traceback (most recent call last): File "<string>", line 308, in build_extension File "/usr/lib/python3.11/site-packages/Cython/Distutils/build_ext.py", line 135, in build_extension super(build_ext, self).build_extension(ext) File "/usr/lib/python3.11/site-packages/setuptools/_distutils/command/build_ext.py", line 572, in build_extension self.compiler.link_shared_object( File "/usr/lib/python3.11/site-packages/setuptools/_distutils/ccompiler.py", line 752, in link_shared_object self.link( File "/usr/lib/python3.11/site-packages/setuptools/_distutils/unixccompiler.py", line 268, in link raise LinkError(msg) distutils.errors.LinkError: command '/usr/bin/x86_64-pc-linux-gnu-gcc' failed with exit code 1 During handling of the above exception, another exception occurred: Traceback (most recent call last): File "<frozen runpy>", line 198, in _run_module_as_main File "<frozen runpy>", line 88, in _run_code File "/usr/lib/python3.11/site-packages/gpep517/__main__.py", line 429, in <module> sys.exit(main()) ^^^^^^ File "/usr/lib/python3.11/site-packages/gpep517/__main__.py", line 425, in main return func(args) ^^^^^^^^^^ File "/usr/lib/python3.11/site-packages/gpep517/__main__.py", line 215, in build_wheel print(build_wheel_impl(args, args.wheel_dir), file=out) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/usr/lib/python3.11/site-packages/gpep517/__main__.py", line 207, in build_wheel_impl wheel_name = backend.build_wheel(str(wheel_dir), args.config_json) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/usr/lib/python3.11/site-packages/setuptools/build_meta.py", line 404, in build_wheel return self._build_with_temp_dir( ^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/usr/lib/python3.11/site-packages/setuptools/build_meta.py", line 389, in _build_with_temp_dir self.run_setup() File "/usr/lib/python3.11/site-packages/setuptools/build_meta.py", line 311, in run_setup exec(code, locals()) File "<string>", line 335, in <module> File "<string>", line 326, in run_setup File "/usr/lib/python3.11/site-packages/setuptools/__init__.py", line 103, in setup return distutils.core.setup(**attrs) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/usr/lib/python3.11/site-packages/setuptools/_distutils/core.py", line 185, in setup return run_commands(dist) ^^^^^^^^^^^^^^^^^^ File "/usr/lib/python3.11/site-packages/setuptools/_distutils/core.py", line 201, in run_commands dist.run_commands() File "/usr/lib/python3.11/site-packages/setuptools/_distutils/dist.py", line 969, in run_commands self.run_command(cmd) File "/usr/lib/python3.11/site-packages/setuptools/dist.py", line 963, in run_command super().run_command(command) File "/usr/lib/python3.11/site-packages/setuptools/_distutils/dist.py", line 988, in run_command cmd_obj.run() File "/usr/lib/python3.11/site-packages/wheel/bdist_wheel.py", line 368, in run self.run_command("build") File "/usr/lib/python3.11/site-packages/setuptools/_distutils/cmd.py", line 318, in run_command self.distribution.run_command(command) File "/usr/lib/python3.11/site-packages/setuptools/dist.py", line 963, in run_command super().run_command(command) File "/usr/lib/python3.11/site-packages/setuptools/_distutils/dist.py", line 988, in run_command cmd_obj.run() File "/usr/lib/python3.11/site-packages/setuptools/_distutils/command/build.py", line 131, in run self.run_command(cmd_name) File "/usr/lib/python3.11/site-packages/setuptools/_distutils/cmd.py", line 318, in run_command self.distribution.run_command(command) File "/usr/lib/python3.11/site-packages/setuptools/dist.py", line 963, in run_command super().run_command(command) File "/usr/lib/python3.11/site-packages/setuptools/_distutils/dist.py", line 988, in run_command cmd_obj.run() File "<string>", line 301, in run File "/usr/lib/python3.11/site-packages/setuptools/_distutils/command/build_ext.py", line 345, in run self.build_extensions() File "/usr/lib/python3.11/site-packages/setuptools/_distutils/command/build_ext.py", line 465, in build_extensions self._build_extensions_parallel() File "/usr/lib/python3.11/site-packages/setuptools/_distutils/command/build_ext.py", line 488, in _build_extensions_parallel fut.result() File "/usr/lib/python3.11/concurrent/futures/_base.py", line 456, in result return self.__get_result() ^^^^^^^^^^^^^^^^^^^ File "/usr/lib/python3.11/concurrent/futures/_base.py", line 401, in __get_result raise self._exception File "/usr/lib/python3.11/concurrent/futures/thread.py", line 58, in run result = self.fn(*self.args, **self.kwargs) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "<string>", line 311, in build_extension BuildFailed * ERROR: dev-python/numcodecs-0.12.1-r1::science failed (compile phase): * Wheel build failed * * Call stack: * ebuild.sh, line 136: Called src_compile * environment, line 3974: Called distutils-r1_src_compile * environment, line 1907: Called _distutils-r1_run_foreach_impl 'python_compile' * environment, line 723: Called python_foreach_impl 'distutils-r1_run_phase' 'python_compile' * environment, line 3594: Called multibuild_foreach_variant '_python_multibuild_wrapper' 'distutils-r1_run_phase' 'python_compile' * environment, line 3095: Called _multibuild_run '_python_multibuild_wrapper' 'distutils-r1_run_phase' 'python_compile' * environment, line 3093: Called _python_multibuild_wrapper 'distutils-r1_run_phase' 'python_compile' * environment, line 1194: Called distutils-r1_run_phase 'python_compile' * environment, line 1891: Called python_compile * environment, line 3393: Called distutils-r1_python_compile * environment, line 1706: Called distutils_pep517_install '/var/tmp/portage/dev-python/numcodecs-0.12.1-r1/work/numcodecs-0.12.1-python3_11/install' * environment, line 2247: Called die * The specific snippet of code: * local wheel=$("${cmd[@]}" 3>&1 1>&2 || die "Wheel build failed"); * * If you need support, post the output of `emerge --info '=dev-python/numcodecs-0.12.1-r1::science'`, * the complete build log and the output of `emerge -pqv '=dev-python/numcodecs-0.12.1-r1::science'`. * The complete build log is located at '/var/tmp/portage/dev-python/numcodecs-0.12.1-r1/temp/build.log'. * The ebuild environment file is located at '/var/tmp/portage/dev-python/numcodecs-0.12.1-r1/temp/environment'. * Working directory: '/var/tmp/portage/dev-python/numcodecs-0.12.1-r1/work/numcodecs-0.12.1' * S: '/var/tmp/portage/dev-python/numcodecs-0.12.1-r1/work/numcodecs-0.12.1' >>> Failed to emerge dev-python/numcodecs-0.12.1-r1, Log file: >>> '/var/tmp/portage/dev-python/numcodecs-0.12.1-r1/temp/build.log' * Messages for package dev-python/numcodecs-0.12.1-r1: * ERROR: dev-python/numcodecs-0.12.1-r1::science failed (compile phase): * Wheel build failed * * Call stack: * ebuild.sh, line 136: Called src_compile * environment, line 3974: Called distutils-r1_src_compile * environment, line 1907: Called _distutils-r1_run_foreach_impl 'python_compile' * environment, line 723: Called python_foreach_impl 'distutils-r1_run_phase' 'python_compile' * environment, line 3594: Called multibuild_foreach_variant '_python_multibuild_wrapper' 'distutils-r1_run_phase' 'python_compile' * environment, line 3095: Called _multibuild_run '_python_multibuild_wrapper' 'distutils-r1_run_phase' 'python_compile' * environment, line 3093: Called _python_multibuild_wrapper 'distutils-r1_run_phase' 'python_compile' * environment, line 1194: Called distutils-r1_run_phase 'python_compile' * environment, line 1891: Called python_compile * environment, line 3393: Called distutils-r1_python_compile * environment, line 1706: Called distutils_pep517_install '/var/tmp/portage/dev-python/numcodecs-0.12.1-r1/work/numcodecs-0.12.1-python3_11/install' * environment, line 2247: Called die * The specific snippet of code: * local wheel=$("${cmd[@]}" 3>&1 1>&2 || die "Wheel build failed"); * * If you need support, post the output of `emerge --info '=dev-python/numcodecs-0.12.1-r1::science'`, * the complete build log and the output of `emerge -pqv '=dev-python/numcodecs-0.12.1-r1::science'`. * The complete build log is located at '/var/tmp/portage/dev-python/numcodecs-0.12.1-r1/temp/build.log'. * The ebuild environment file is located at '/var/tmp/portage/dev-python/numcodecs-0.12.1-r1/temp/environment'. * Working directory: '/var/tmp/portage/dev-python/numcodecs-0.12.1-r1/work/numcodecs-0.12.1' * S: '/var/tmp/portage/dev-python/numcodecs-0.12.1-r1/work/numcodecs-0.12.1' * * The following package has failed to build, install, or execute postinst: * * (dev-python/numcodecs-0.12.1-r1:0/0::science, ebuild scheduled for merge), Log file: * '/var/tmp/portage/dev-python/numcodecs-0.12.1-r1/temp/build.log' *