* Package: sci-biology/neuroconv-0.4.8:0 * Repository: science * Maintainer: gentoo@chymera.eu sci@gentoo.org * USE: abi_x86_64 amd64 ecephys elibc_glibc icephys kernel_linux ophys python_targets_python3_11 test * FEATURES: network-sandbox preserve-libs sandbox test userpriv usersandbox >>> Unpacking source... >>> Unpacking neuroconv-0.4.8.gh.tar.gz to /var/tmp/portage/sci-biology/neuroconv-0.4.8/work >>> Source unpacked in /var/tmp/portage/sci-biology/neuroconv-0.4.8/work >>> Preparing source in /var/tmp/portage/sci-biology/neuroconv-0.4.8/work/neuroconv-0.4.8 ... * Build system packages: * dev-python/gpep517 : 15 * dev-python/installer : 0.7.0 * dev-python/setuptools : 69.0.3 * dev-python/setuptools-rust : 1.8.1 * dev-python/setuptools-scm : 8.0.4 * dev-python/wheel : 0.42.0 >>> Source prepared. >>> Configuring source in /var/tmp/portage/sci-biology/neuroconv-0.4.8/work/neuroconv-0.4.8 ... >>> Source configured. >>> Compiling source in /var/tmp/portage/sci-biology/neuroconv-0.4.8/work/neuroconv-0.4.8 ... * python3_11: running distutils-r1_run_phase distutils-r1_python_compile * Building the wheel for neuroconv-0.4.8 via setuptools.build_meta:__legacy__ python3.11 -m gpep517 build-wheel --prefix=/usr --backend setuptools.build_meta:__legacy__ --output-fd 3 --wheel-dir /var/tmp/portage/sci-biology/neuroconv-0.4.8/work/neuroconv-0.4.8-python3_11/wheel 2024-03-21 17:35:23,932 gpep517 INFO Building wheel via backend setuptools.build_meta:__legacy__ 2024-03-21 17:35:24,161 root INFO running bdist_wheel 2024-03-21 17:35:24,256 root INFO running build 2024-03-21 17:35:24,256 root INFO running build_py 2024-03-21 17:35:24,275 root INFO creating /var/tmp/portage/sci-biology/neuroconv-0.4.8/work/neuroconv-0.4.8-python3_11/build 2024-03-21 17:35:24,276 root INFO creating /var/tmp/portage/sci-biology/neuroconv-0.4.8/work/neuroconv-0.4.8-python3_11/build/lib 2024-03-21 17:35:24,276 root INFO creating 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17:35:24,277 root INFO creating /var/tmp/portage/sci-biology/neuroconv-0.4.8/work/neuroconv-0.4.8-python3_11/build/lib/neuroconv/datainterfaces 2024-03-21 17:35:24,277 root INFO copying src/neuroconv/datainterfaces/__init__.py -> /var/tmp/portage/sci-biology/neuroconv-0.4.8/work/neuroconv-0.4.8-python3_11/build/lib/neuroconv/datainterfaces 2024-03-21 17:35:24,278 root INFO creating /var/tmp/portage/sci-biology/neuroconv-0.4.8/work/neuroconv-0.4.8-python3_11/build/lib/neuroconv/utils 2024-03-21 17:35:24,278 root INFO copying src/neuroconv/utils/checks.py -> /var/tmp/portage/sci-biology/neuroconv-0.4.8/work/neuroconv-0.4.8-python3_11/build/lib/neuroconv/utils 2024-03-21 17:35:24,278 root INFO copying src/neuroconv/utils/dict.py -> /var/tmp/portage/sci-biology/neuroconv-0.4.8/work/neuroconv-0.4.8-python3_11/build/lib/neuroconv/utils 2024-03-21 17:35:24,278 root INFO copying src/neuroconv/utils/path.py -> 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17:35:24,327 root INFO copying src/neuroconv/tools/nwb_helpers/_configuration_models/_zarr_backend.py -> /var/tmp/portage/sci-biology/neuroconv-0.4.8/work/neuroconv-0.4.8-python3_11/build/lib/neuroconv/tools/nwb_helpers/_configuration_models 2024-03-21 17:35:24,328 root INFO copying src/neuroconv/tools/nwb_helpers/_configuration_models/_zarr_dataset_io.py -> /var/tmp/portage/sci-biology/neuroconv-0.4.8/work/neuroconv-0.4.8-python3_11/build/lib/neuroconv/tools/nwb_helpers/_configuration_models 2024-03-21 17:35:24,328 root INFO copying src/neuroconv/tools/nwb_helpers/_configuration_models/__init__.py -> /var/tmp/portage/sci-biology/neuroconv-0.4.8/work/neuroconv-0.4.8-python3_11/build/lib/neuroconv/tools/nwb_helpers/_configuration_models 2024-03-21 17:35:24,328 root INFO copying src/neuroconv/tools/nwb_helpers/_configuration_models/_hdf5_dataset_io.py -> 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src/neuroconv.egg-info/entry_points.txt 2024-03-21 17:35:24,377 root INFO writing requirements to src/neuroconv.egg-info/requires.txt 2024-03-21 17:35:24,377 root INFO writing top-level names to src/neuroconv.egg-info/top_level.txt 2024-03-21 17:35:24,448 root INFO writing manifest file 'src/neuroconv.egg-info/SOURCES.txt' [03/21/24 17:35:24] ERROR listing git files failed - pretending there aren't any git.py:24 2024-03-21 17:35:24,540 root INFO reading manifest file 'src/neuroconv.egg-info/SOURCES.txt' 2024-03-21 17:35:24,541 root INFO reading manifest template 'MANIFEST.in' 2024-03-21 17:35:24,541 root INFO adding license file 'license.txt' 2024-03-21 17:35:24,543 root INFO writing manifest file 'src/neuroconv.egg-info/SOURCES.txt' /usr/lib/python3.11/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'neuroconv.schemas' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'neuroconv.schemas' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'neuroconv.schemas' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'neuroconv.schemas' to be distributed and are already explicitly excluding 'neuroconv.schemas' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) 2024-03-21 17:35:24,550 root INFO creating /var/tmp/portage/sci-biology/neuroconv-0.4.8/work/neuroconv-0.4.8-python3_11/build/lib/neuroconv/schemas 2024-03-21 17:35:24,551 root INFO copying src/neuroconv/schemas/base_metadata_schema.json -> /var/tmp/portage/sci-biology/neuroconv-0.4.8/work/neuroconv-0.4.8-python3_11/build/lib/neuroconv/schemas 2024-03-21 17:35:24,551 root INFO copying src/neuroconv/schemas/metadata_schema.json -> /var/tmp/portage/sci-biology/neuroconv-0.4.8/work/neuroconv-0.4.8-python3_11/build/lib/neuroconv/schemas 2024-03-21 17:35:24,551 root INFO copying src/neuroconv/schemas/source_schema.json -> /var/tmp/portage/sci-biology/neuroconv-0.4.8/work/neuroconv-0.4.8-python3_11/build/lib/neuroconv/schemas 2024-03-21 17:35:24,551 root INFO copying src/neuroconv/schemas/time_series_schema.json -> /var/tmp/portage/sci-biology/neuroconv-0.4.8/work/neuroconv-0.4.8-python3_11/build/lib/neuroconv/schemas 2024-03-21 17:35:24,552 root INFO copying src/neuroconv/schemas/timeintervals_schema.json -> /var/tmp/portage/sci-biology/neuroconv-0.4.8/work/neuroconv-0.4.8-python3_11/build/lib/neuroconv/schemas 2024-03-21 17:35:24,552 root INFO copying src/neuroconv/schemas/yaml_conversion_specification_schema.json -> /var/tmp/portage/sci-biology/neuroconv-0.4.8/work/neuroconv-0.4.8-python3_11/build/lib/neuroconv/schemas 2024-03-21 17:35:24,552 root INFO copying src/neuroconv/tools/testing/_path_expander_demo_ibl_filepaths.txt -> /var/tmp/portage/sci-biology/neuroconv-0.4.8/work/neuroconv-0.4.8-python3_11/build/lib/neuroconv/tools/testing 2024-03-21 17:35:24,559 root WARNING warning: build_py: byte-compiling is disabled, skipping. 2024-03-21 17:35:24,599 wheel INFO installing to /var/tmp/portage/sci-biology/neuroconv-0.4.8/work/neuroconv-0.4.8-python3_11/build/bdist.linux-x86_64/wheel 2024-03-21 17:35:24,599 root INFO running install 2024-03-21 17:35:24,607 root INFO running install_lib 2024-03-21 17:35:24,626 root INFO creating /var/tmp/portage/sci-biology/neuroconv-0.4.8/work/neuroconv-0.4.8-python3_11/build/bdist.linux-x86_64 2024-03-21 17:35:24,626 root INFO creating /var/tmp/portage/sci-biology/neuroconv-0.4.8/work/neuroconv-0.4.8-python3_11/build/bdist.linux-x86_64/wheel 2024-03-21 17:35:24,626 root INFO creating /var/tmp/portage/sci-biology/neuroconv-0.4.8/work/neuroconv-0.4.8-python3_11/build/bdist.linux-x86_64/wheel/neuroconv 2024-03-21 17:35:24,626 root INFO creating /var/tmp/portage/sci-biology/neuroconv-0.4.8/work/neuroconv-0.4.8-python3_11/build/bdist.linux-x86_64/wheel/neuroconv/schemas 2024-03-21 17:35:24,626 root INFO copying /var/tmp/portage/sci-biology/neuroconv-0.4.8/work/neuroconv-0.4.8-python3_11/build/lib/neuroconv/schemas/time_series_schema.json -> /var/tmp/portage/sci-biology/neuroconv-0.4.8/work/neuroconv-0.4.8-python3_11/build/bdist.linux-x86_64/wheel/neuroconv/schemas 2024-03-21 17:35:24,626 root INFO copying /var/tmp/portage/sci-biology/neuroconv-0.4.8/work/neuroconv-0.4.8-python3_11/build/lib/neuroconv/schemas/source_schema.json -> /var/tmp/portage/sci-biology/neuroconv-0.4.8/work/neuroconv-0.4.8-python3_11/build/bdist.linux-x86_64/wheel/neuroconv/schemas 2024-03-21 17:35:24,627 root INFO copying /var/tmp/portage/sci-biology/neuroconv-0.4.8/work/neuroconv-0.4.8-python3_11/build/lib/neuroconv/schemas/base_metadata_schema.json -> /var/tmp/portage/sci-biology/neuroconv-0.4.8/work/neuroconv-0.4.8-python3_11/build/bdist.linux-x86_64/wheel/neuroconv/schemas 2024-03-21 17:35:24,627 root INFO copying /var/tmp/portage/sci-biology/neuroconv-0.4.8/work/neuroconv-0.4.8-python3_11/build/lib/neuroconv/schemas/metadata_schema.json -> /var/tmp/portage/sci-biology/neuroconv-0.4.8/work/neuroconv-0.4.8-python3_11/build/bdist.linux-x86_64/wheel/neuroconv/schemas 2024-03-21 17:35:24,627 root INFO copying /var/tmp/portage/sci-biology/neuroconv-0.4.8/work/neuroconv-0.4.8-python3_11/build/lib/neuroconv/schemas/yaml_conversion_specification_schema.json -> /var/tmp/portage/sci-biology/neuroconv-0.4.8/work/neuroconv-0.4.8-python3_11/build/bdist.linux-x86_64/wheel/neuroconv/schemas 2024-03-21 17:35:24,627 root INFO copying /var/tmp/portage/sci-biology/neuroconv-0.4.8/work/neuroconv-0.4.8-python3_11/build/lib/neuroconv/schemas/timeintervals_schema.json -> /var/tmp/portage/sci-biology/neuroconv-0.4.8/work/neuroconv-0.4.8-python3_11/build/bdist.linux-x86_64/wheel/neuroconv/schemas 2024-03-21 17:35:24,628 root INFO copying /var/tmp/portage/sci-biology/neuroconv-0.4.8/work/neuroconv-0.4.8-python3_11/build/lib/neuroconv/nwbconverter.py -> /var/tmp/portage/sci-biology/neuroconv-0.4.8/work/neuroconv-0.4.8-python3_11/build/bdist.linux-x86_64/wheel/neuroconv 2024-03-21 17:35:24,628 root INFO creating /var/tmp/portage/sci-biology/neuroconv-0.4.8/work/neuroconv-0.4.8-python3_11/build/bdist.linux-x86_64/wheel/neuroconv/datainterfaces 2024-03-21 17:35:24,628 root INFO creating /var/tmp/portage/sci-biology/neuroconv-0.4.8/work/neuroconv-0.4.8-python3_11/build/bdist.linux-x86_64/wheel/neuroconv/datainterfaces/ophys 2024-03-21 17:35:24,628 root INFO creating /var/tmp/portage/sci-biology/neuroconv-0.4.8/work/neuroconv-0.4.8-python3_11/build/bdist.linux-x86_64/wheel/neuroconv/datainterfaces/ophys/extract 2024-03-21 17:35:24,628 root INFO copying /var/tmp/portage/sci-biology/neuroconv-0.4.8/work/neuroconv-0.4.8-python3_11/build/lib/neuroconv/datainterfaces/ophys/extract/extractdatainterface.py -> /var/tmp/portage/sci-biology/neuroconv-0.4.8/work/neuroconv-0.4.8-python3_11/build/bdist.linux-x86_64/wheel/neuroconv/datainterfaces/ophys/extract 2024-03-21 17:35:24,629 root INFO copying /var/tmp/portage/sci-biology/neuroconv-0.4.8/work/neuroconv-0.4.8-python3_11/build/lib/neuroconv/datainterfaces/ophys/extract/__init__.py -> /var/tmp/portage/sci-biology/neuroconv-0.4.8/work/neuroconv-0.4.8-python3_11/build/bdist.linux-x86_64/wheel/neuroconv/datainterfaces/ophys/extract 2024-03-21 17:35:24,629 root INFO copying /var/tmp/portage/sci-biology/neuroconv-0.4.8/work/neuroconv-0.4.8-python3_11/build/lib/neuroconv/datainterfaces/ophys/basesegmentationextractorinterface.py -> /var/tmp/portage/sci-biology/neuroconv-0.4.8/work/neuroconv-0.4.8-python3_11/build/bdist.linux-x86_64/wheel/neuroconv/datainterfaces/ophys 2024-03-21 17:35:24,629 root INFO creating /var/tmp/portage/sci-biology/neuroconv-0.4.8/work/neuroconv-0.4.8-python3_11/build/bdist.linux-x86_64/wheel/neuroconv/datainterfaces/ophys/cnmfe 2024-03-21 17:35:24,629 root INFO copying /var/tmp/portage/sci-biology/neuroconv-0.4.8/work/neuroconv-0.4.8-python3_11/build/lib/neuroconv/datainterfaces/ophys/cnmfe/__init__.py -> /var/tmp/portage/sci-biology/neuroconv-0.4.8/work/neuroconv-0.4.8-python3_11/build/bdist.linux-x86_64/wheel/neuroconv/datainterfaces/ophys/cnmfe 2024-03-21 17:35:24,629 root INFO copying /var/tmp/portage/sci-biology/neuroconv-0.4.8/work/neuroconv-0.4.8-python3_11/build/lib/neuroconv/datainterfaces/ophys/cnmfe/cnmfedatainterface.py -> /var/tmp/portage/sci-biology/neuroconv-0.4.8/work/neuroconv-0.4.8-python3_11/build/bdist.linux-x86_64/wheel/neuroconv/datainterfaces/ophys/cnmfe 2024-03-21 17:35:24,630 root INFO creating /var/tmp/portage/sci-biology/neuroconv-0.4.8/work/neuroconv-0.4.8-python3_11/build/bdist.linux-x86_64/wheel/neuroconv/datainterfaces/ophys/hdf5 2024-03-21 17:35:24,630 root INFO copying /var/tmp/portage/sci-biology/neuroconv-0.4.8/work/neuroconv-0.4.8-python3_11/build/lib/neuroconv/datainterfaces/ophys/hdf5/__init__.py -> /var/tmp/portage/sci-biology/neuroconv-0.4.8/work/neuroconv-0.4.8-python3_11/build/bdist.linux-x86_64/wheel/neuroconv/datainterfaces/ophys/hdf5 2024-03-21 17:35:24,630 root INFO copying /var/tmp/portage/sci-biology/neuroconv-0.4.8/work/neuroconv-0.4.8-python3_11/build/lib/neuroconv/datainterfaces/ophys/hdf5/hdf5datainterface.py -> /var/tmp/portage/sci-biology/neuroconv-0.4.8/work/neuroconv-0.4.8-python3_11/build/bdist.linux-x86_64/wheel/neuroconv/datainterfaces/ophys/hdf5 2024-03-21 17:35:24,630 root INFO copying /var/tmp/portage/sci-biology/neuroconv-0.4.8/work/neuroconv-0.4.8-python3_11/build/lib/neuroconv/datainterfaces/ophys/__init__.py -> /var/tmp/portage/sci-biology/neuroconv-0.4.8/work/neuroconv-0.4.8-python3_11/build/bdist.linux-x86_64/wheel/neuroconv/datainterfaces/ophys 2024-03-21 17:35:24,631 root INFO creating /var/tmp/portage/sci-biology/neuroconv-0.4.8/work/neuroconv-0.4.8-python3_11/build/bdist.linux-x86_64/wheel/neuroconv/datainterfaces/ophys/suite2p 2024-03-21 17:35:24,631 root INFO copying /var/tmp/portage/sci-biology/neuroconv-0.4.8/work/neuroconv-0.4.8-python3_11/build/lib/neuroconv/datainterfaces/ophys/suite2p/__init__.py -> /var/tmp/portage/sci-biology/neuroconv-0.4.8/work/neuroconv-0.4.8-python3_11/build/bdist.linux-x86_64/wheel/neuroconv/datainterfaces/ophys/suite2p 2024-03-21 17:35:24,631 root INFO copying /var/tmp/portage/sci-biology/neuroconv-0.4.8/work/neuroconv-0.4.8-python3_11/build/lib/neuroconv/datainterfaces/ophys/suite2p/suite2pdatainterface.py -> /var/tmp/portage/sci-biology/neuroconv-0.4.8/work/neuroconv-0.4.8-python3_11/build/bdist.linux-x86_64/wheel/neuroconv/datainterfaces/ophys/suite2p 2024-03-21 17:35:24,631 root INFO creating /var/tmp/portage/sci-biology/neuroconv-0.4.8/work/neuroconv-0.4.8-python3_11/build/bdist.linux-x86_64/wheel/neuroconv/datainterfaces/ophys/sima 2024-03-21 17:35:24,631 root INFO copying /var/tmp/portage/sci-biology/neuroconv-0.4.8/work/neuroconv-0.4.8-python3_11/build/lib/neuroconv/datainterfaces/ophys/sima/__init__.py -> /var/tmp/portage/sci-biology/neuroconv-0.4.8/work/neuroconv-0.4.8-python3_11/build/bdist.linux-x86_64/wheel/neuroconv/datainterfaces/ophys/sima 2024-03-21 17:35:24,632 root INFO copying /var/tmp/portage/sci-biology/neuroconv-0.4.8/work/neuroconv-0.4.8-python3_11/build/lib/neuroconv/datainterfaces/ophys/sima/simadatainterface.py -> /var/tmp/portage/sci-biology/neuroconv-0.4.8/work/neuroconv-0.4.8-python3_11/build/bdist.linux-x86_64/wheel/neuroconv/datainterfaces/ophys/sima 2024-03-21 17:35:24,632 root INFO creating /var/tmp/portage/sci-biology/neuroconv-0.4.8/work/neuroconv-0.4.8-python3_11/build/bdist.linux-x86_64/wheel/neuroconv/datainterfaces/ophys/caiman 2024-03-21 17:35:24,632 root INFO copying /var/tmp/portage/sci-biology/neuroconv-0.4.8/work/neuroconv-0.4.8-python3_11/build/lib/neuroconv/datainterfaces/ophys/caiman/__init__.py -> /var/tmp/portage/sci-biology/neuroconv-0.4.8/work/neuroconv-0.4.8-python3_11/build/bdist.linux-x86_64/wheel/neuroconv/datainterfaces/ophys/caiman 2024-03-21 17:35:24,632 root INFO copying /var/tmp/portage/sci-biology/neuroconv-0.4.8/work/neuroconv-0.4.8-python3_11/build/lib/neuroconv/datainterfaces/ophys/caiman/caimandatainterface.py -> /var/tmp/portage/sci-biology/neuroconv-0.4.8/work/neuroconv-0.4.8-python3_11/build/bdist.linux-x86_64/wheel/neuroconv/datainterfaces/ophys/caiman 2024-03-21 17:35:24,633 root INFO creating /var/tmp/portage/sci-biology/neuroconv-0.4.8/work/neuroconv-0.4.8-python3_11/build/bdist.linux-x86_64/wheel/neuroconv/datainterfaces/ophys/sbx 2024-03-21 17:35:24,633 root INFO copying /var/tmp/portage/sci-biology/neuroconv-0.4.8/work/neuroconv-0.4.8-python3_11/build/lib/neuroconv/datainterfaces/ophys/sbx/sbxdatainterface.py -> /var/tmp/portage/sci-biology/neuroconv-0.4.8/work/neuroconv-0.4.8-python3_11/build/bdist.linux-x86_64/wheel/neuroconv/datainterfaces/ophys/sbx 2024-03-21 17:35:24,633 root INFO copying /var/tmp/portage/sci-biology/neuroconv-0.4.8/work/neuroconv-0.4.8-python3_11/build/lib/neuroconv/datainterfaces/ophys/sbx/__init__.py -> /var/tmp/portage/sci-biology/neuroconv-0.4.8/work/neuroconv-0.4.8-python3_11/build/bdist.linux-x86_64/wheel/neuroconv/datainterfaces/ophys/sbx 2024-03-21 17:35:24,633 root INFO creating /var/tmp/portage/sci-biology/neuroconv-0.4.8/work/neuroconv-0.4.8-python3_11/build/bdist.linux-x86_64/wheel/neuroconv/datainterfaces/ophys/scanimage 2024-03-21 17:35:24,633 root INFO copying /var/tmp/portage/sci-biology/neuroconv-0.4.8/work/neuroconv-0.4.8-python3_11/build/lib/neuroconv/datainterfaces/ophys/scanimage/scanimageimaginginterface.py -> /var/tmp/portage/sci-biology/neuroconv-0.4.8/work/neuroconv-0.4.8-python3_11/build/bdist.linux-x86_64/wheel/neuroconv/datainterfaces/ophys/scanimage 2024-03-21 17:35:24,634 root INFO copying /var/tmp/portage/sci-biology/neuroconv-0.4.8/work/neuroconv-0.4.8-python3_11/build/lib/neuroconv/datainterfaces/ophys/scanimage/__init__.py -> /var/tmp/portage/sci-biology/neuroconv-0.4.8/work/neuroconv-0.4.8-python3_11/build/bdist.linux-x86_64/wheel/neuroconv/datainterfaces/ophys/scanimage 2024-03-21 17:35:24,634 root INFO copying /var/tmp/portage/sci-biology/neuroconv-0.4.8/work/neuroconv-0.4.8-python3_11/build/lib/neuroconv/datainterfaces/ophys/baseimagingextractorinterface.py -> /var/tmp/portage/sci-biology/neuroconv-0.4.8/work/neuroconv-0.4.8-python3_11/build/bdist.linux-x86_64/wheel/neuroconv/datainterfaces/ophys 2024-03-21 17:35:24,634 root INFO creating /var/tmp/portage/sci-biology/neuroconv-0.4.8/work/neuroconv-0.4.8-python3_11/build/bdist.linux-x86_64/wheel/neuroconv/datainterfaces/ophys/miniscope 2024-03-21 17:35:24,634 root INFO copying /var/tmp/portage/sci-biology/neuroconv-0.4.8/work/neuroconv-0.4.8-python3_11/build/lib/neuroconv/datainterfaces/ophys/miniscope/__init__.py -> /var/tmp/portage/sci-biology/neuroconv-0.4.8/work/neuroconv-0.4.8-python3_11/build/bdist.linux-x86_64/wheel/neuroconv/datainterfaces/ophys/miniscope 2024-03-21 17:35:24,635 root INFO copying /var/tmp/portage/sci-biology/neuroconv-0.4.8/work/neuroconv-0.4.8-python3_11/build/lib/neuroconv/datainterfaces/ophys/miniscope/miniscopeconverter.py -> /var/tmp/portage/sci-biology/neuroconv-0.4.8/work/neuroconv-0.4.8-python3_11/build/bdist.linux-x86_64/wheel/neuroconv/datainterfaces/ophys/miniscope 2024-03-21 17:35:24,635 root INFO copying /var/tmp/portage/sci-biology/neuroconv-0.4.8/work/neuroconv-0.4.8-python3_11/build/lib/neuroconv/datainterfaces/ophys/miniscope/miniscopeimagingdatainterface.py -> /var/tmp/portage/sci-biology/neuroconv-0.4.8/work/neuroconv-0.4.8-python3_11/build/bdist.linux-x86_64/wheel/neuroconv/datainterfaces/ophys/miniscope 2024-03-21 17:35:24,635 root INFO creating /var/tmp/portage/sci-biology/neuroconv-0.4.8/work/neuroconv-0.4.8-python3_11/build/bdist.linux-x86_64/wheel/neuroconv/datainterfaces/ophys/micromanagertiff 2024-03-21 17:35:24,635 root INFO copying /var/tmp/portage/sci-biology/neuroconv-0.4.8/work/neuroconv-0.4.8-python3_11/build/lib/neuroconv/datainterfaces/ophys/micromanagertiff/__init__.py -> /var/tmp/portage/sci-biology/neuroconv-0.4.8/work/neuroconv-0.4.8-python3_11/build/bdist.linux-x86_64/wheel/neuroconv/datainterfaces/ophys/micromanagertiff 2024-03-21 17:35:24,635 root INFO copying /var/tmp/portage/sci-biology/neuroconv-0.4.8/work/neuroconv-0.4.8-python3_11/build/lib/neuroconv/datainterfaces/ophys/micromanagertiff/micromanagertiffdatainterface.py -> /var/tmp/portage/sci-biology/neuroconv-0.4.8/work/neuroconv-0.4.8-python3_11/build/bdist.linux-x86_64/wheel/neuroconv/datainterfaces/ophys/micromanagertiff 2024-03-21 17:35:24,636 root INFO creating /var/tmp/portage/sci-biology/neuroconv-0.4.8/work/neuroconv-0.4.8-python3_11/build/bdist.linux-x86_64/wheel/neuroconv/datainterfaces/ophys/brukertiff 2024-03-21 17:35:24,636 root INFO copying /var/tmp/portage/sci-biology/neuroconv-0.4.8/work/neuroconv-0.4.8-python3_11/build/lib/neuroconv/datainterfaces/ophys/brukertiff/brukertiffdatainterface.py -> /var/tmp/portage/sci-biology/neuroconv-0.4.8/work/neuroconv-0.4.8-python3_11/build/bdist.linux-x86_64/wheel/neuroconv/datainterfaces/ophys/brukertiff 2024-03-21 17:35:24,636 root INFO copying /var/tmp/portage/sci-biology/neuroconv-0.4.8/work/neuroconv-0.4.8-python3_11/build/lib/neuroconv/datainterfaces/ophys/brukertiff/brukertiffconverter.py -> /var/tmp/portage/sci-biology/neuroconv-0.4.8/work/neuroconv-0.4.8-python3_11/build/bdist.linux-x86_64/wheel/neuroconv/datainterfaces/ophys/brukertiff 2024-03-21 17:35:24,636 root INFO copying /var/tmp/portage/sci-biology/neuroconv-0.4.8/work/neuroconv-0.4.8-python3_11/build/lib/neuroconv/datainterfaces/ophys/brukertiff/__init__.py -> /var/tmp/portage/sci-biology/neuroconv-0.4.8/work/neuroconv-0.4.8-python3_11/build/bdist.linux-x86_64/wheel/neuroconv/datainterfaces/ophys/brukertiff 2024-03-21 17:35:24,637 root INFO creating /var/tmp/portage/sci-biology/neuroconv-0.4.8/work/neuroconv-0.4.8-python3_11/build/bdist.linux-x86_64/wheel/neuroconv/datainterfaces/ophys/tiff 2024-03-21 17:35:24,637 root INFO copying /var/tmp/portage/sci-biology/neuroconv-0.4.8/work/neuroconv-0.4.8-python3_11/build/lib/neuroconv/datainterfaces/ophys/tiff/__init__.py -> /var/tmp/portage/sci-biology/neuroconv-0.4.8/work/neuroconv-0.4.8-python3_11/build/bdist.linux-x86_64/wheel/neuroconv/datainterfaces/ophys/tiff 2024-03-21 17:35:24,637 root INFO copying /var/tmp/portage/sci-biology/neuroconv-0.4.8/work/neuroconv-0.4.8-python3_11/build/lib/neuroconv/datainterfaces/ophys/tiff/tiffdatainterface.py -> /var/tmp/portage/sci-biology/neuroconv-0.4.8/work/neuroconv-0.4.8-python3_11/build/bdist.linux-x86_64/wheel/neuroconv/datainterfaces/ophys/tiff 2024-03-21 17:35:24,637 root INFO creating /var/tmp/portage/sci-biology/neuroconv-0.4.8/work/neuroconv-0.4.8-python3_11/build/bdist.linux-x86_64/wheel/neuroconv/datainterfaces/behavior 2024-03-21 17:35:24,637 root INFO creating /var/tmp/portage/sci-biology/neuroconv-0.4.8/work/neuroconv-0.4.8-python3_11/build/bdist.linux-x86_64/wheel/neuroconv/datainterfaces/behavior/audio 2024-03-21 17:35:24,638 root INFO copying /var/tmp/portage/sci-biology/neuroconv-0.4.8/work/neuroconv-0.4.8-python3_11/build/lib/neuroconv/datainterfaces/behavior/audio/audiointerface.py -> /var/tmp/portage/sci-biology/neuroconv-0.4.8/work/neuroconv-0.4.8-python3_11/build/bdist.linux-x86_64/wheel/neuroconv/datainterfaces/behavior/audio 2024-03-21 17:35:24,638 root INFO copying /var/tmp/portage/sci-biology/neuroconv-0.4.8/work/neuroconv-0.4.8-python3_11/build/lib/neuroconv/datainterfaces/behavior/audio/__init__.py -> /var/tmp/portage/sci-biology/neuroconv-0.4.8/work/neuroconv-0.4.8-python3_11/build/bdist.linux-x86_64/wheel/neuroconv/datainterfaces/behavior/audio 2024-03-21 17:35:24,638 root INFO creating /var/tmp/portage/sci-biology/neuroconv-0.4.8/work/neuroconv-0.4.8-python3_11/build/bdist.linux-x86_64/wheel/neuroconv/datainterfaces/behavior/sleap 2024-03-21 17:35:24,638 root INFO copying /var/tmp/portage/sci-biology/neuroconv-0.4.8/work/neuroconv-0.4.8-python3_11/build/lib/neuroconv/datainterfaces/behavior/sleap/sleapdatainterface.py -> /var/tmp/portage/sci-biology/neuroconv-0.4.8/work/neuroconv-0.4.8-python3_11/build/bdist.linux-x86_64/wheel/neuroconv/datainterfaces/behavior/sleap 2024-03-21 17:35:24,639 root INFO copying /var/tmp/portage/sci-biology/neuroconv-0.4.8/work/neuroconv-0.4.8-python3_11/build/lib/neuroconv/datainterfaces/behavior/sleap/__init__.py -> /var/tmp/portage/sci-biology/neuroconv-0.4.8/work/neuroconv-0.4.8-python3_11/build/bdist.linux-x86_64/wheel/neuroconv/datainterfaces/behavior/sleap 2024-03-21 17:35:24,639 root INFO copying /var/tmp/portage/sci-biology/neuroconv-0.4.8/work/neuroconv-0.4.8-python3_11/build/lib/neuroconv/datainterfaces/behavior/sleap/sleap_utils.py -> /var/tmp/portage/sci-biology/neuroconv-0.4.8/work/neuroconv-0.4.8-python3_11/build/bdist.linux-x86_64/wheel/neuroconv/datainterfaces/behavior/sleap 2024-03-21 17:35:24,639 root INFO copying /var/tmp/portage/sci-biology/neuroconv-0.4.8/work/neuroconv-0.4.8-python3_11/build/lib/neuroconv/datainterfaces/behavior/__init__.py -> /var/tmp/portage/sci-biology/neuroconv-0.4.8/work/neuroconv-0.4.8-python3_11/build/bdist.linux-x86_64/wheel/neuroconv/datainterfaces/behavior 2024-03-21 17:35:24,639 root INFO creating /var/tmp/portage/sci-biology/neuroconv-0.4.8/work/neuroconv-0.4.8-python3_11/build/bdist.linux-x86_64/wheel/neuroconv/datainterfaces/behavior/neuralynx 2024-03-21 17:35:24,640 root INFO copying /var/tmp/portage/sci-biology/neuroconv-0.4.8/work/neuroconv-0.4.8-python3_11/build/lib/neuroconv/datainterfaces/behavior/neuralynx/neuralynx_nvt_interface.py -> /var/tmp/portage/sci-biology/neuroconv-0.4.8/work/neuroconv-0.4.8-python3_11/build/bdist.linux-x86_64/wheel/neuroconv/datainterfaces/behavior/neuralynx 2024-03-21 17:35:24,640 root INFO copying /var/tmp/portage/sci-biology/neuroconv-0.4.8/work/neuroconv-0.4.8-python3_11/build/lib/neuroconv/datainterfaces/behavior/neuralynx/__init__.py -> /var/tmp/portage/sci-biology/neuroconv-0.4.8/work/neuroconv-0.4.8-python3_11/build/bdist.linux-x86_64/wheel/neuroconv/datainterfaces/behavior/neuralynx 2024-03-21 17:35:24,640 root INFO copying /var/tmp/portage/sci-biology/neuroconv-0.4.8/work/neuroconv-0.4.8-python3_11/build/lib/neuroconv/datainterfaces/behavior/neuralynx/nvt_utils.py -> /var/tmp/portage/sci-biology/neuroconv-0.4.8/work/neuroconv-0.4.8-python3_11/build/bdist.linux-x86_64/wheel/neuroconv/datainterfaces/behavior/neuralynx 2024-03-21 17:35:24,640 root INFO creating /var/tmp/portage/sci-biology/neuroconv-0.4.8/work/neuroconv-0.4.8-python3_11/build/bdist.linux-x86_64/wheel/neuroconv/datainterfaces/behavior/lightningpose 2024-03-21 17:35:24,641 root INFO copying /var/tmp/portage/sci-biology/neuroconv-0.4.8/work/neuroconv-0.4.8-python3_11/build/lib/neuroconv/datainterfaces/behavior/lightningpose/lightningposedatainterface.py -> /var/tmp/portage/sci-biology/neuroconv-0.4.8/work/neuroconv-0.4.8-python3_11/build/bdist.linux-x86_64/wheel/neuroconv/datainterfaces/behavior/lightningpose 2024-03-21 17:35:24,641 root INFO copying /var/tmp/portage/sci-biology/neuroconv-0.4.8/work/neuroconv-0.4.8-python3_11/build/lib/neuroconv/datainterfaces/behavior/lightningpose/lightningposeconverter.py -> /var/tmp/portage/sci-biology/neuroconv-0.4.8/work/neuroconv-0.4.8-python3_11/build/bdist.linux-x86_64/wheel/neuroconv/datainterfaces/behavior/lightningpose 2024-03-21 17:35:24,641 root INFO copying /var/tmp/portage/sci-biology/neuroconv-0.4.8/work/neuroconv-0.4.8-python3_11/build/lib/neuroconv/datainterfaces/behavior/lightningpose/__init__.py -> /var/tmp/portage/sci-biology/neuroconv-0.4.8/work/neuroconv-0.4.8-python3_11/build/bdist.linux-x86_64/wheel/neuroconv/datainterfaces/behavior/lightningpose 2024-03-21 17:35:24,641 root INFO creating /var/tmp/portage/sci-biology/neuroconv-0.4.8/work/neuroconv-0.4.8-python3_11/build/bdist.linux-x86_64/wheel/neuroconv/datainterfaces/behavior/miniscope 2024-03-21 17:35:24,642 root INFO copying /var/tmp/portage/sci-biology/neuroconv-0.4.8/work/neuroconv-0.4.8-python3_11/build/lib/neuroconv/datainterfaces/behavior/miniscope/miniscopedatainterface.py -> /var/tmp/portage/sci-biology/neuroconv-0.4.8/work/neuroconv-0.4.8-python3_11/build/bdist.linux-x86_64/wheel/neuroconv/datainterfaces/behavior/miniscope 2024-03-21 17:35:24,642 root INFO copying /var/tmp/portage/sci-biology/neuroconv-0.4.8/work/neuroconv-0.4.8-python3_11/build/lib/neuroconv/datainterfaces/behavior/miniscope/__init__.py -> /var/tmp/portage/sci-biology/neuroconv-0.4.8/work/neuroconv-0.4.8-python3_11/build/bdist.linux-x86_64/wheel/neuroconv/datainterfaces/behavior/miniscope 2024-03-21 17:35:24,642 root INFO creating /var/tmp/portage/sci-biology/neuroconv-0.4.8/work/neuroconv-0.4.8-python3_11/build/bdist.linux-x86_64/wheel/neuroconv/datainterfaces/behavior/deeplabcut 2024-03-21 17:35:24,642 root INFO copying /var/tmp/portage/sci-biology/neuroconv-0.4.8/work/neuroconv-0.4.8-python3_11/build/lib/neuroconv/datainterfaces/behavior/deeplabcut/__init__.py -> /var/tmp/portage/sci-biology/neuroconv-0.4.8/work/neuroconv-0.4.8-python3_11/build/bdist.linux-x86_64/wheel/neuroconv/datainterfaces/behavior/deeplabcut 2024-03-21 17:35:24,643 root INFO copying /var/tmp/portage/sci-biology/neuroconv-0.4.8/work/neuroconv-0.4.8-python3_11/build/lib/neuroconv/datainterfaces/behavior/deeplabcut/deeplabcutdatainterface.py -> /var/tmp/portage/sci-biology/neuroconv-0.4.8/work/neuroconv-0.4.8-python3_11/build/bdist.linux-x86_64/wheel/neuroconv/datainterfaces/behavior/deeplabcut 2024-03-21 17:35:24,643 root INFO creating /var/tmp/portage/sci-biology/neuroconv-0.4.8/work/neuroconv-0.4.8-python3_11/build/bdist.linux-x86_64/wheel/neuroconv/datainterfaces/behavior/video 2024-03-21 17:35:24,643 root INFO copying /var/tmp/portage/sci-biology/neuroconv-0.4.8/work/neuroconv-0.4.8-python3_11/build/lib/neuroconv/datainterfaces/behavior/video/video_utils.py -> /var/tmp/portage/sci-biology/neuroconv-0.4.8/work/neuroconv-0.4.8-python3_11/build/bdist.linux-x86_64/wheel/neuroconv/datainterfaces/behavior/video 2024-03-21 17:35:24,643 root INFO copying /var/tmp/portage/sci-biology/neuroconv-0.4.8/work/neuroconv-0.4.8-python3_11/build/lib/neuroconv/datainterfaces/behavior/video/__init__.py -> /var/tmp/portage/sci-biology/neuroconv-0.4.8/work/neuroconv-0.4.8-python3_11/build/bdist.linux-x86_64/wheel/neuroconv/datainterfaces/behavior/video 2024-03-21 17:35:24,644 root INFO copying /var/tmp/portage/sci-biology/neuroconv-0.4.8/work/neuroconv-0.4.8-python3_11/build/lib/neuroconv/datainterfaces/behavior/video/videodatainterface.py -> /var/tmp/portage/sci-biology/neuroconv-0.4.8/work/neuroconv-0.4.8-python3_11/build/bdist.linux-x86_64/wheel/neuroconv/datainterfaces/behavior/video 2024-03-21 17:35:24,644 root INFO creating /var/tmp/portage/sci-biology/neuroconv-0.4.8/work/neuroconv-0.4.8-python3_11/build/bdist.linux-x86_64/wheel/neuroconv/datainterfaces/behavior/fictrac 2024-03-21 17:35:24,644 root INFO copying /var/tmp/portage/sci-biology/neuroconv-0.4.8/work/neuroconv-0.4.8-python3_11/build/lib/neuroconv/datainterfaces/behavior/fictrac/__init__.py -> /var/tmp/portage/sci-biology/neuroconv-0.4.8/work/neuroconv-0.4.8-python3_11/build/bdist.linux-x86_64/wheel/neuroconv/datainterfaces/behavior/fictrac 2024-03-21 17:35:24,644 root INFO copying /var/tmp/portage/sci-biology/neuroconv-0.4.8/work/neuroconv-0.4.8-python3_11/build/lib/neuroconv/datainterfaces/behavior/fictrac/fictracdatainterface.py -> /var/tmp/portage/sci-biology/neuroconv-0.4.8/work/neuroconv-0.4.8-python3_11/build/bdist.linux-x86_64/wheel/neuroconv/datainterfaces/behavior/fictrac 2024-03-21 17:35:24,644 root INFO copying /var/tmp/portage/sci-biology/neuroconv-0.4.8/work/neuroconv-0.4.8-python3_11/build/lib/neuroconv/datainterfaces/__init__.py -> /var/tmp/portage/sci-biology/neuroconv-0.4.8/work/neuroconv-0.4.8-python3_11/build/bdist.linux-x86_64/wheel/neuroconv/datainterfaces 2024-03-21 17:35:24,645 root INFO creating /var/tmp/portage/sci-biology/neuroconv-0.4.8/work/neuroconv-0.4.8-python3_11/build/bdist.linux-x86_64/wheel/neuroconv/datainterfaces/icephys 2024-03-21 17:35:24,645 root INFO creating /var/tmp/portage/sci-biology/neuroconv-0.4.8/work/neuroconv-0.4.8-python3_11/build/bdist.linux-x86_64/wheel/neuroconv/datainterfaces/icephys/abf 2024-03-21 17:35:24,645 root INFO copying /var/tmp/portage/sci-biology/neuroconv-0.4.8/work/neuroconv-0.4.8-python3_11/build/lib/neuroconv/datainterfaces/icephys/abf/__init__.py -> /var/tmp/portage/sci-biology/neuroconv-0.4.8/work/neuroconv-0.4.8-python3_11/build/bdist.linux-x86_64/wheel/neuroconv/datainterfaces/icephys/abf 2024-03-21 17:35:24,645 root INFO copying /var/tmp/portage/sci-biology/neuroconv-0.4.8/work/neuroconv-0.4.8-python3_11/build/lib/neuroconv/datainterfaces/icephys/abf/abfdatainterface.py -> /var/tmp/portage/sci-biology/neuroconv-0.4.8/work/neuroconv-0.4.8-python3_11/build/bdist.linux-x86_64/wheel/neuroconv/datainterfaces/icephys/abf 2024-03-21 17:35:24,646 root INFO copying /var/tmp/portage/sci-biology/neuroconv-0.4.8/work/neuroconv-0.4.8-python3_11/build/lib/neuroconv/datainterfaces/icephys/__init__.py -> /var/tmp/portage/sci-biology/neuroconv-0.4.8/work/neuroconv-0.4.8-python3_11/build/bdist.linux-x86_64/wheel/neuroconv/datainterfaces/icephys 2024-03-21 17:35:24,646 root INFO copying /var/tmp/portage/sci-biology/neuroconv-0.4.8/work/neuroconv-0.4.8-python3_11/build/lib/neuroconv/datainterfaces/icephys/baseicephysinterface.py -> /var/tmp/portage/sci-biology/neuroconv-0.4.8/work/neuroconv-0.4.8-python3_11/build/bdist.linux-x86_64/wheel/neuroconv/datainterfaces/icephys 2024-03-21 17:35:24,646 root INFO creating /var/tmp/portage/sci-biology/neuroconv-0.4.8/work/neuroconv-0.4.8-python3_11/build/bdist.linux-x86_64/wheel/neuroconv/datainterfaces/text 2024-03-21 17:35:24,646 root INFO creating /var/tmp/portage/sci-biology/neuroconv-0.4.8/work/neuroconv-0.4.8-python3_11/build/bdist.linux-x86_64/wheel/neuroconv/datainterfaces/text/excel 2024-03-21 17:35:24,646 root INFO copying /var/tmp/portage/sci-biology/neuroconv-0.4.8/work/neuroconv-0.4.8-python3_11/build/lib/neuroconv/datainterfaces/text/excel/__init__.py -> /var/tmp/portage/sci-biology/neuroconv-0.4.8/work/neuroconv-0.4.8-python3_11/build/bdist.linux-x86_64/wheel/neuroconv/datainterfaces/text/excel 2024-03-21 17:35:24,647 root INFO copying /var/tmp/portage/sci-biology/neuroconv-0.4.8/work/neuroconv-0.4.8-python3_11/build/lib/neuroconv/datainterfaces/text/excel/exceltimeintervalsinterface.py -> /var/tmp/portage/sci-biology/neuroconv-0.4.8/work/neuroconv-0.4.8-python3_11/build/bdist.linux-x86_64/wheel/neuroconv/datainterfaces/text/excel 2024-03-21 17:35:24,647 root INFO copying /var/tmp/portage/sci-biology/neuroconv-0.4.8/work/neuroconv-0.4.8-python3_11/build/lib/neuroconv/datainterfaces/text/timeintervalsinterface.py -> /var/tmp/portage/sci-biology/neuroconv-0.4.8/work/neuroconv-0.4.8-python3_11/build/bdist.linux-x86_64/wheel/neuroconv/datainterfaces/text 2024-03-21 17:35:24,647 root INFO copying /var/tmp/portage/sci-biology/neuroconv-0.4.8/work/neuroconv-0.4.8-python3_11/build/lib/neuroconv/datainterfaces/text/__init__.py -> /var/tmp/portage/sci-biology/neuroconv-0.4.8/work/neuroconv-0.4.8-python3_11/build/bdist.linux-x86_64/wheel/neuroconv/datainterfaces/text 2024-03-21 17:35:24,647 root INFO creating /var/tmp/portage/sci-biology/neuroconv-0.4.8/work/neuroconv-0.4.8-python3_11/build/bdist.linux-x86_64/wheel/neuroconv/datainterfaces/text/csv 2024-03-21 17:35:24,647 root INFO copying /var/tmp/portage/sci-biology/neuroconv-0.4.8/work/neuroconv-0.4.8-python3_11/build/lib/neuroconv/datainterfaces/text/csv/__init__.py -> /var/tmp/portage/sci-biology/neuroconv-0.4.8/work/neuroconv-0.4.8-python3_11/build/bdist.linux-x86_64/wheel/neuroconv/datainterfaces/text/csv 2024-03-21 17:35:24,648 root INFO copying /var/tmp/portage/sci-biology/neuroconv-0.4.8/work/neuroconv-0.4.8-python3_11/build/lib/neuroconv/datainterfaces/text/csv/csvtimeintervalsinterface.py -> /var/tmp/portage/sci-biology/neuroconv-0.4.8/work/neuroconv-0.4.8-python3_11/build/bdist.linux-x86_64/wheel/neuroconv/datainterfaces/text/csv 2024-03-21 17:35:24,648 root INFO creating /var/tmp/portage/sci-biology/neuroconv-0.4.8/work/neuroconv-0.4.8-python3_11/build/bdist.linux-x86_64/wheel/neuroconv/datainterfaces/ecephys 2024-03-21 17:35:24,648 root INFO creating /var/tmp/portage/sci-biology/neuroconv-0.4.8/work/neuroconv-0.4.8-python3_11/build/bdist.linux-x86_64/wheel/neuroconv/datainterfaces/ecephys/plexon 2024-03-21 17:35:24,648 root INFO copying /var/tmp/portage/sci-biology/neuroconv-0.4.8/work/neuroconv-0.4.8-python3_11/build/lib/neuroconv/datainterfaces/ecephys/plexon/plexondatainterface.py -> /var/tmp/portage/sci-biology/neuroconv-0.4.8/work/neuroconv-0.4.8-python3_11/build/bdist.linux-x86_64/wheel/neuroconv/datainterfaces/ecephys/plexon 2024-03-21 17:35:24,648 root INFO copying /var/tmp/portage/sci-biology/neuroconv-0.4.8/work/neuroconv-0.4.8-python3_11/build/lib/neuroconv/datainterfaces/ecephys/plexon/__init__.py -> /var/tmp/portage/sci-biology/neuroconv-0.4.8/work/neuroconv-0.4.8-python3_11/build/bdist.linux-x86_64/wheel/neuroconv/datainterfaces/ecephys/plexon 2024-03-21 17:35:24,649 root INFO copying /var/tmp/portage/sci-biology/neuroconv-0.4.8/work/neuroconv-0.4.8-python3_11/build/lib/neuroconv/datainterfaces/ecephys/basesortingextractorinterface.py -> /var/tmp/portage/sci-biology/neuroconv-0.4.8/work/neuroconv-0.4.8-python3_11/build/bdist.linux-x86_64/wheel/neuroconv/datainterfaces/ecephys 2024-03-21 17:35:24,649 root INFO creating /var/tmp/portage/sci-biology/neuroconv-0.4.8/work/neuroconv-0.4.8-python3_11/build/bdist.linux-x86_64/wheel/neuroconv/datainterfaces/ecephys/biocam 2024-03-21 17:35:24,649 root INFO copying /var/tmp/portage/sci-biology/neuroconv-0.4.8/work/neuroconv-0.4.8-python3_11/build/lib/neuroconv/datainterfaces/ecephys/biocam/__init__.py -> /var/tmp/portage/sci-biology/neuroconv-0.4.8/work/neuroconv-0.4.8-python3_11/build/bdist.linux-x86_64/wheel/neuroconv/datainterfaces/ecephys/biocam 2024-03-21 17:35:24,649 root INFO copying /var/tmp/portage/sci-biology/neuroconv-0.4.8/work/neuroconv-0.4.8-python3_11/build/lib/neuroconv/datainterfaces/ecephys/biocam/biocamdatainterface.py -> /var/tmp/portage/sci-biology/neuroconv-0.4.8/work/neuroconv-0.4.8-python3_11/build/bdist.linux-x86_64/wheel/neuroconv/datainterfaces/ecephys/biocam 2024-03-21 17:35:24,650 root INFO creating /var/tmp/portage/sci-biology/neuroconv-0.4.8/work/neuroconv-0.4.8-python3_11/build/bdist.linux-x86_64/wheel/neuroconv/datainterfaces/ecephys/axona 2024-03-21 17:35:24,650 root INFO copying /var/tmp/portage/sci-biology/neuroconv-0.4.8/work/neuroconv-0.4.8-python3_11/build/lib/neuroconv/datainterfaces/ecephys/axona/axona_utils.py -> /var/tmp/portage/sci-biology/neuroconv-0.4.8/work/neuroconv-0.4.8-python3_11/build/bdist.linux-x86_64/wheel/neuroconv/datainterfaces/ecephys/axona 2024-03-21 17:35:24,650 root INFO copying /var/tmp/portage/sci-biology/neuroconv-0.4.8/work/neuroconv-0.4.8-python3_11/build/lib/neuroconv/datainterfaces/ecephys/axona/__init__.py -> /var/tmp/portage/sci-biology/neuroconv-0.4.8/work/neuroconv-0.4.8-python3_11/build/bdist.linux-x86_64/wheel/neuroconv/datainterfaces/ecephys/axona 2024-03-21 17:35:24,650 root INFO copying /var/tmp/portage/sci-biology/neuroconv-0.4.8/work/neuroconv-0.4.8-python3_11/build/lib/neuroconv/datainterfaces/ecephys/axona/axonadatainterface.py -> /var/tmp/portage/sci-biology/neuroconv-0.4.8/work/neuroconv-0.4.8-python3_11/build/bdist.linux-x86_64/wheel/neuroconv/datainterfaces/ecephys/axona 2024-03-21 17:35:24,650 root INFO creating /var/tmp/portage/sci-biology/neuroconv-0.4.8/work/neuroconv-0.4.8-python3_11/build/bdist.linux-x86_64/wheel/neuroconv/datainterfaces/ecephys/neuroscope 2024-03-21 17:35:24,651 root INFO copying /var/tmp/portage/sci-biology/neuroconv-0.4.8/work/neuroconv-0.4.8-python3_11/build/lib/neuroconv/datainterfaces/ecephys/neuroscope/neuroscopedatainterface.py -> /var/tmp/portage/sci-biology/neuroconv-0.4.8/work/neuroconv-0.4.8-python3_11/build/bdist.linux-x86_64/wheel/neuroconv/datainterfaces/ecephys/neuroscope 2024-03-21 17:35:24,651 root INFO copying /var/tmp/portage/sci-biology/neuroconv-0.4.8/work/neuroconv-0.4.8-python3_11/build/lib/neuroconv/datainterfaces/ecephys/neuroscope/neuroscope_utils.py -> /var/tmp/portage/sci-biology/neuroconv-0.4.8/work/neuroconv-0.4.8-python3_11/build/bdist.linux-x86_64/wheel/neuroconv/datainterfaces/ecephys/neuroscope 2024-03-21 17:35:24,651 root INFO copying /var/tmp/portage/sci-biology/neuroconv-0.4.8/work/neuroconv-0.4.8-python3_11/build/lib/neuroconv/datainterfaces/ecephys/neuroscope/__init__.py -> /var/tmp/portage/sci-biology/neuroconv-0.4.8/work/neuroconv-0.4.8-python3_11/build/bdist.linux-x86_64/wheel/neuroconv/datainterfaces/ecephys/neuroscope 2024-03-21 17:35:24,651 root INFO copying /var/tmp/portage/sci-biology/neuroconv-0.4.8/work/neuroconv-0.4.8-python3_11/build/lib/neuroconv/datainterfaces/ecephys/baselfpextractorinterface.py -> /var/tmp/portage/sci-biology/neuroconv-0.4.8/work/neuroconv-0.4.8-python3_11/build/bdist.linux-x86_64/wheel/neuroconv/datainterfaces/ecephys 2024-03-21 17:35:24,652 root INFO creating /var/tmp/portage/sci-biology/neuroconv-0.4.8/work/neuroconv-0.4.8-python3_11/build/bdist.linux-x86_64/wheel/neuroconv/datainterfaces/ecephys/openephys 2024-03-21 17:35:24,652 root INFO copying /var/tmp/portage/sci-biology/neuroconv-0.4.8/work/neuroconv-0.4.8-python3_11/build/lib/neuroconv/datainterfaces/ecephys/openephys/openephysdatainterface.py -> /var/tmp/portage/sci-biology/neuroconv-0.4.8/work/neuroconv-0.4.8-python3_11/build/bdist.linux-x86_64/wheel/neuroconv/datainterfaces/ecephys/openephys 2024-03-21 17:35:24,652 root INFO copying /var/tmp/portage/sci-biology/neuroconv-0.4.8/work/neuroconv-0.4.8-python3_11/build/lib/neuroconv/datainterfaces/ecephys/openephys/openephyslegacydatainterface.py -> /var/tmp/portage/sci-biology/neuroconv-0.4.8/work/neuroconv-0.4.8-python3_11/build/bdist.linux-x86_64/wheel/neuroconv/datainterfaces/ecephys/openephys 2024-03-21 17:35:24,652 root INFO copying /var/tmp/portage/sci-biology/neuroconv-0.4.8/work/neuroconv-0.4.8-python3_11/build/lib/neuroconv/datainterfaces/ecephys/openephys/__init__.py -> /var/tmp/portage/sci-biology/neuroconv-0.4.8/work/neuroconv-0.4.8-python3_11/build/bdist.linux-x86_64/wheel/neuroconv/datainterfaces/ecephys/openephys 2024-03-21 17:35:24,652 root INFO copying /var/tmp/portage/sci-biology/neuroconv-0.4.8/work/neuroconv-0.4.8-python3_11/build/lib/neuroconv/datainterfaces/ecephys/openephys/openephyssortingdatainterface.py -> /var/tmp/portage/sci-biology/neuroconv-0.4.8/work/neuroconv-0.4.8-python3_11/build/bdist.linux-x86_64/wheel/neuroconv/datainterfaces/ecephys/openephys 2024-03-21 17:35:24,653 root INFO copying /var/tmp/portage/sci-biology/neuroconv-0.4.8/work/neuroconv-0.4.8-python3_11/build/lib/neuroconv/datainterfaces/ecephys/openephys/openephysbinarydatainterface.py -> /var/tmp/portage/sci-biology/neuroconv-0.4.8/work/neuroconv-0.4.8-python3_11/build/bdist.linux-x86_64/wheel/neuroconv/datainterfaces/ecephys/openephys 2024-03-21 17:35:24,653 root INFO creating /var/tmp/portage/sci-biology/neuroconv-0.4.8/work/neuroconv-0.4.8-python3_11/build/bdist.linux-x86_64/wheel/neuroconv/datainterfaces/ecephys/spikegadgets 2024-03-21 17:35:24,653 root INFO copying /var/tmp/portage/sci-biology/neuroconv-0.4.8/work/neuroconv-0.4.8-python3_11/build/lib/neuroconv/datainterfaces/ecephys/spikegadgets/spikegadgetsdatainterface.py -> /var/tmp/portage/sci-biology/neuroconv-0.4.8/work/neuroconv-0.4.8-python3_11/build/bdist.linux-x86_64/wheel/neuroconv/datainterfaces/ecephys/spikegadgets 2024-03-21 17:35:24,653 root INFO copying /var/tmp/portage/sci-biology/neuroconv-0.4.8/work/neuroconv-0.4.8-python3_11/build/lib/neuroconv/datainterfaces/ecephys/spikegadgets/__init__.py -> /var/tmp/portage/sci-biology/neuroconv-0.4.8/work/neuroconv-0.4.8-python3_11/build/bdist.linux-x86_64/wheel/neuroconv/datainterfaces/ecephys/spikegadgets 2024-03-21 17:35:24,653 root INFO copying 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17:35:24,655 root INFO copying /var/tmp/portage/sci-biology/neuroconv-0.4.8/work/neuroconv-0.4.8-python3_11/build/lib/neuroconv/datainterfaces/ecephys/spikeglx/spikeglxnidqinterface.py -> /var/tmp/portage/sci-biology/neuroconv-0.4.8/work/neuroconv-0.4.8-python3_11/build/bdist.linux-x86_64/wheel/neuroconv/datainterfaces/ecephys/spikeglx 2024-03-21 17:35:24,655 root INFO creating /var/tmp/portage/sci-biology/neuroconv-0.4.8/work/neuroconv-0.4.8-python3_11/build/bdist.linux-x86_64/wheel/neuroconv/datainterfaces/ecephys/neuralynx 2024-03-21 17:35:24,655 root INFO copying /var/tmp/portage/sci-biology/neuroconv-0.4.8/work/neuroconv-0.4.8-python3_11/build/lib/neuroconv/datainterfaces/ecephys/neuralynx/neuralynxdatainterface.py -> /var/tmp/portage/sci-biology/neuroconv-0.4.8/work/neuroconv-0.4.8-python3_11/build/bdist.linux-x86_64/wheel/neuroconv/datainterfaces/ecephys/neuralynx 2024-03-21 17:35:24,655 root INFO copying 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/var/tmp/portage/sci-biology/neuroconv-0.4.8/work/neuroconv-0.4.8-python3_11/build/lib/neuroconv/datainterfaces/ecephys/edf/edfdatainterface.py -> /var/tmp/portage/sci-biology/neuroconv-0.4.8/work/neuroconv-0.4.8-python3_11/build/bdist.linux-x86_64/wheel/neuroconv/datainterfaces/ecephys/edf 2024-03-21 17:35:24,661 root INFO copying /var/tmp/portage/sci-biology/neuroconv-0.4.8/work/neuroconv-0.4.8-python3_11/build/lib/neuroconv/datainterfaces/ecephys/edf/__init__.py -> /var/tmp/portage/sci-biology/neuroconv-0.4.8/work/neuroconv-0.4.8-python3_11/build/bdist.linux-x86_64/wheel/neuroconv/datainterfaces/ecephys/edf 2024-03-21 17:35:24,662 root INFO creating /var/tmp/portage/sci-biology/neuroconv-0.4.8/work/neuroconv-0.4.8-python3_11/build/bdist.linux-x86_64/wheel/neuroconv/datainterfaces/ecephys/phy 2024-03-21 17:35:24,662 root INFO copying /var/tmp/portage/sci-biology/neuroconv-0.4.8/work/neuroconv-0.4.8-python3_11/build/lib/neuroconv/datainterfaces/ecephys/phy/__init__.py -> /var/tmp/portage/sci-biology/neuroconv-0.4.8/work/neuroconv-0.4.8-python3_11/build/bdist.linux-x86_64/wheel/neuroconv/datainterfaces/ecephys/phy 2024-03-21 17:35:24,662 root INFO copying /var/tmp/portage/sci-biology/neuroconv-0.4.8/work/neuroconv-0.4.8-python3_11/build/lib/neuroconv/datainterfaces/ecephys/phy/phydatainterface.py -> /var/tmp/portage/sci-biology/neuroconv-0.4.8/work/neuroconv-0.4.8-python3_11/build/bdist.linux-x86_64/wheel/neuroconv/datainterfaces/ecephys/phy 2024-03-21 17:35:24,662 root INFO creating /var/tmp/portage/sci-biology/neuroconv-0.4.8/work/neuroconv-0.4.8-python3_11/build/bdist.linux-x86_64/wheel/neuroconv/datainterfaces/ecephys/blackrock 2024-03-21 17:35:24,662 root INFO copying /var/tmp/portage/sci-biology/neuroconv-0.4.8/work/neuroconv-0.4.8-python3_11/build/lib/neuroconv/datainterfaces/ecephys/blackrock/blackrockdatainterface.py -> /var/tmp/portage/sci-biology/neuroconv-0.4.8/work/neuroconv-0.4.8-python3_11/build/bdist.linux-x86_64/wheel/neuroconv/datainterfaces/ecephys/blackrock 2024-03-21 17:35:24,663 root INFO copying /var/tmp/portage/sci-biology/neuroconv-0.4.8/work/neuroconv-0.4.8-python3_11/build/lib/neuroconv/datainterfaces/ecephys/blackrock/header_tools.py -> /var/tmp/portage/sci-biology/neuroconv-0.4.8/work/neuroconv-0.4.8-python3_11/build/bdist.linux-x86_64/wheel/neuroconv/datainterfaces/ecephys/blackrock 2024-03-21 17:35:24,663 root INFO copying /var/tmp/portage/sci-biology/neuroconv-0.4.8/work/neuroconv-0.4.8-python3_11/build/lib/neuroconv/datainterfaces/ecephys/blackrock/__init__.py -> /var/tmp/portage/sci-biology/neuroconv-0.4.8/work/neuroconv-0.4.8-python3_11/build/bdist.linux-x86_64/wheel/neuroconv/datainterfaces/ecephys/blackrock 2024-03-21 17:35:24,663 root INFO creating 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17:35:24,664 root INFO copying /var/tmp/portage/sci-biology/neuroconv-0.4.8/work/neuroconv-0.4.8-python3_11/build/lib/neuroconv/utils/checks.py -> /var/tmp/portage/sci-biology/neuroconv-0.4.8/work/neuroconv-0.4.8-python3_11/build/bdist.linux-x86_64/wheel/neuroconv/utils 2024-03-21 17:35:24,664 root INFO copying /var/tmp/portage/sci-biology/neuroconv-0.4.8/work/neuroconv-0.4.8-python3_11/build/lib/neuroconv/utils/dict.py -> /var/tmp/portage/sci-biology/neuroconv-0.4.8/work/neuroconv-0.4.8-python3_11/build/bdist.linux-x86_64/wheel/neuroconv/utils 2024-03-21 17:35:24,664 root INFO copying /var/tmp/portage/sci-biology/neuroconv-0.4.8/work/neuroconv-0.4.8-python3_11/build/lib/neuroconv/utils/path.py -> /var/tmp/portage/sci-biology/neuroconv-0.4.8/work/neuroconv-0.4.8-python3_11/build/bdist.linux-x86_64/wheel/neuroconv/utils 2024-03-21 17:35:24,664 root INFO copying /var/tmp/portage/sci-biology/neuroconv-0.4.8/work/neuroconv-0.4.8-python3_11/build/lib/neuroconv/utils/json_schema.py -> 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17:35:24,754 wheel INFO removing /var/tmp/portage/sci-biology/neuroconv-0.4.8/work/neuroconv-0.4.8-python3_11/build/bdist.linux-x86_64/wheel 2024-03-21 17:35:24,764 gpep517 INFO The backend produced /var/tmp/portage/sci-biology/neuroconv-0.4.8/work/neuroconv-0.4.8-python3_11/wheel/neuroconv-0.4.8-py3-none-any.whl * Installing neuroconv-0.4.8-py3-none-any.whl to /var/tmp/portage/sci-biology/neuroconv-0.4.8/work/neuroconv-0.4.8-python3_11/install python3.11 -m gpep517 install-wheel --destdir=/var/tmp/portage/sci-biology/neuroconv-0.4.8/work/neuroconv-0.4.8-python3_11/install --interpreter=/usr/bin/python3.11 --prefix=/usr --optimize=all /var/tmp/portage/sci-biology/neuroconv-0.4.8/work/neuroconv-0.4.8-python3_11/wheel/neuroconv-0.4.8-py3-none-any.whl 2024-03-21 17:35:24,885 gpep517 INFO Installing /var/tmp/portage/sci-biology/neuroconv-0.4.8/work/neuroconv-0.4.8-python3_11/wheel/neuroconv-0.4.8-py3-none-any.whl into /var/tmp/portage/sci-biology/neuroconv-0.4.8/work/neuroconv-0.4.8-python3_11/install 2024-03-21 17:35:25,391 gpep517 INFO Installation complete >>> Source compiled. >>> Test phase: sci-biology/neuroconv-0.4.8 * python3_11: running distutils-r1_run_phase python_test python3.11 -m pytest -vv -ra -l -Wdefault --color=yes -o console_output_style=count -o tmp_path_retention_count=0 -o tmp_path_retention_policy=failed -p no:cov -p no:flake8 -p no:flakes -p no:pylint -p no:markdown -p no:sugar -p no:xvfb -p no:pytest-describe -p no:plus -p no:tavern -p no:salt-factories tests/test_minimal tests/test_ecephys =========================================================== test session starts ============================================================ platform linux -- Python 3.11.8, pytest-7.4.4, pluggy-1.4.0 -- /var/tmp/portage/sci-biology/neuroconv-0.4.8/work/neuroconv-0.4.8-python3_11/install/usr/bin/python3.11 cachedir: .pytest_cache rootdir: /var/tmp/portage/sci-biology/neuroconv-0.4.8/work/neuroconv-0.4.8 configfile: pyproject.toml plugins: mock-3.12.0, pyfakefs-5.3.5, rerunfailures-14.0, anyio-4.2.0, pkgcore-0.12.24 collecting ... collected 270 items tests/test_minimal/test_converter.py::test_converter PASSED [ 1/270] tests/test_minimal/test_converter.py::TestNWBConverterAndPipeInitialization::test_child_class_source_data_init PASSED [ 2/270] tests/test_minimal/test_converter.py::TestNWBConverterAndPipeInitialization::test_consistent_init_pipe_vs_nwb PASSED [ 3/270] tests/test_minimal/test_converter.py::TestNWBConverterAndPipeInitialization::test_pipe_list_dict PASSED [ 4/270] tests/test_minimal/test_converter.py::TestNWBConverterAndPipeInitialization::test_pipe_list_init PASSED [ 5/270] tests/test_minimal/test_converter.py::TestNWBConverterAndPipeInitialization::test_unique_names_with_list_argument PASSED [ 6/270] tests/test_minimal/test_metadata_schema.py::test_metadata_schema PASSED [ 7/270] 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tests/test_ecephys/test_tools_spikeinterface.py::TestAddUnitsTable::test_write_units_table_in_processing_module PASSED [261/270] tests/test_ecephys/test_tools_spikeinterface.py::TestWriteWaveforms::test_group_name_property PASSED [262/270] tests/test_ecephys/test_tools_spikeinterface.py::TestWriteWaveforms::test_missing_electrode_group PASSED [263/270] tests/test_ecephys/test_tools_spikeinterface.py::TestWriteWaveforms::test_units_table_name PASSED [264/270] tests/test_ecephys/test_tools_spikeinterface.py::TestWriteWaveforms::test_write_multiple_probes_with_electrical_series PASSED [265/270] tests/test_ecephys/test_tools_spikeinterface.py::TestWriteWaveforms::test_write_multiple_probes_without_electrical_series PASSED [266/270] tests/test_ecephys/test_tools_spikeinterface.py::TestWriteWaveforms::test_write_multiple_segments PASSED [267/270] tests/test_ecephys/test_tools_spikeinterface.py::TestWriteWaveforms::test_write_recordingless PASSED [268/270] tests/test_ecephys/test_tools_spikeinterface.py::TestWriteWaveforms::test_write_single_segment PASSED [269/270] tests/test_ecephys/test_tools_spikeinterface.py::TestWriteWaveforms::test_write_subset_units PASSED [270/270] ================================================================= FAILURES ================================================================= _______________________________________ TestMockRecordingInterface.test_conversion_as_lone_interface _______________________________________ self = <test_mock_recording_interface.TestMockRecordingInterface testMethod=test_conversion_as_lone_interface> def test_conversion_as_lone_interface(self): interface_kwargs = self.interface_kwargs if isinstance(interface_kwargs, dict): interface_kwargs = [interface_kwargs] for num, kwargs in enumerate(interface_kwargs): with self.subTest(str(num)): self.case = num self.test_kwargs = kwargs self.interface = self.data_interface_cls(**self.test_kwargs) assert isinstance(self.interface, BaseRecordingExtractorInterface) if not self.interface.has_probe(): self.interface.set_probe( generate_mock_probe(num_channels=self.interface.recording_extractor.get_num_channels()), group_mode="by_shank", ) self.check_metadata_schema_valid() self.check_conversion_options_schema_valid() self.check_metadata() self.nwbfile_path = str(self.save_directory / f"{self.__class__.__name__}_{num}.nwb") self.run_conversion(nwbfile_path=self.nwbfile_path) > self.check_read_nwb(nwbfile_path=self.nwbfile_path) interface_kwargs = [{'durations': [0.1]}] kwargs = {'durations': [0.1]} num = 0 self = <test_mock_recording_interface.TestMockRecordingInterface testMethod=test_conversion_as_lone_interface> ../neuroconv-0.4.8-python3_11/install/usr/lib/python3.11/site-packages/neuroconv/tools/testing/data_interface_mixins.py:518: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <test_mock_recording_interface.TestMockRecordingInterface testMethod=test_conversion_as_lone_interface> nwbfile_path = '/var/tmp/portage/sci-biology/neuroconv-0.4.8/temp/tmp9knz3aq5/TestMockRecordingInterface_0.nwb' def check_read_nwb(self, nwbfile_path: str): from spikeinterface.extractors import NwbRecordingExtractor recording = self.interface.recording_extractor electrical_series_name = self.interface.get_metadata()["Ecephys"][self.interface.es_key]["name"] if recording.get_num_segments() == 1: # Spikeinterface behavior is to load the electrode table channel_name property as a channel_id self.nwb_recording = NwbRecordingExtractor( file_path=nwbfile_path, electrical_series_name=electrical_series_name ) # Set channel_ids right for comparison # Neuroconv ALWAYS writes a string property `channel_name`` to the electrode table. # And the NwbRecordingExtractor always uses `channel_name` property as the channel_ids # `check_recordings_equal` compares ids so we need to rename the channels or the original recordings # So they match properties_in_the_recording = recording.get_property_keys() if "channel_name" in properties_in_the_recording: channel_name = recording.get_property("channel_name").astype("str", copy=False) else: channel_name = recording.get_channel_ids().astype("str", copy=False) > recording = recording.rename_channels(new_channel_ids=channel_name) E AttributeError: 'NoiseGeneratorRecording' object has no attribute 'rename_channels' NwbRecordingExtractor = <class 'spikeinterface.extractors.nwbextractors.NwbRecordingExtractor'> channel_name = array(['0', '1', '2', '3'], dtype='<U21') electrical_series_name = 'ElectricalSeries' nwbfile_path = '/var/tmp/portage/sci-biology/neuroconv-0.4.8/temp/tmp9knz3aq5/TestMockRecordingInterface_0.nwb' properties_in_the_recording = ['contact_vector', 'location', 'group'] recording = NoiseGeneratorRecording: 4 channels - 30.0kHz - 1 segments - 3,000 samples - 0.10s (100.00 ms) float32 dtype - 46.88 KiB self = <test_mock_recording_interface.TestMockRecordingInterface testMethod=test_conversion_as_lone_interface> ../neuroconv-0.4.8-python3_11/install/usr/lib/python3.11/site-packages/neuroconv/tools/testing/data_interface_mixins.py:307: AttributeError ----------------------------------------------------------- Captured stdout call ----------------------------------------------------------- NWB file saved at /var/tmp/portage/sci-biology/neuroconv-0.4.8/temp/tmp9knz3aq5/TestMockRecordingInterface_0.nwb! ============================================================= warnings summary ============================================================= ../../../../../../../usr/lib/python3.11/site-packages/hdmf/container.py:11 /usr/lib/python3.11/site-packages/hdmf/container.py:11: DeprecationWarning: Pyarrow will become a required dependency of pandas in the next major release of pandas (pandas 3.0), (to allow more performant data types, such as the Arrow string type, and better interoperability with other libraries) but was not found to be installed on your system. If this would cause problems for you, please provide us feedback at https://github.com/pandas-dev/pandas/issues/54466 import pandas as pd ../neuroconv-0.4.8-python3_11/install/usr/lib/python3.11/site-packages/neuroconv/tools/yaml_conversion_specification/_yaml_conversion_specification.py:7 /var/tmp/portage/sci-biology/neuroconv-0.4.8/work/neuroconv-0.4.8-python3_11/install/usr/lib/python3.11/site-packages/neuroconv/tools/yaml_conversion_specification/_yaml_conversion_specification.py:7: DeprecationWarning: jsonschema.RefResolver is deprecated as of v4.18.0, in favor of the https://github.com/python-jsonschema/referencing library, which provides more compliant referencing behavior as well as more flexible APIs for customization. A future release will remove RefResolver. Please file a feature request (on referencing) if you are missing an API for the kind of customization you need. from jsonschema import RefResolver, validate tests/test_minimal/test_testing/test_mocks/test_mock_ttl.py::TestMockTTLSignals::test_baseline_mean_int_dtype_float_assertion /usr/lib/python3.11/site-packages/hdmf/utils.py:668: UserWarning: Ignoring cached namespace 'hdmf-common' version 1.5.1 because version 1.8.0 is already loaded. return func(args[0], **pargs) tests/test_minimal/test_testing/test_mocks/test_mock_ttl.py::TestMockTTLSignals::test_baseline_mean_int_dtype_float_assertion /usr/lib/python3.11/site-packages/hdmf/utils.py:668: UserWarning: Ignoring cached namespace 'core' version 2.5.0 because version 2.6.0-alpha is already loaded. return func(args[0], **pargs) tests/test_minimal/test_testing/test_mocks/test_mock_ttl.py::TestMockTTLSignals::test_baseline_mean_int_dtype_float_assertion /usr/lib/python3.11/site-packages/hdmf/utils.py:668: UserWarning: Ignoring cached namespace 'hdmf-experimental' version 0.2.0 because version 0.5.0 is already loaded. return func(args[0], **pargs) tests/test_minimal/test_tools/test_backend_and_dataset_configuration/test_helpers/test_get_default_dataset_io_configurations.py::test_configuration_on_external_image_series[hdf5] tests/test_minimal/test_tools/test_backend_and_dataset_configuration/test_helpers/test_get_default_dataset_io_configurations.py::test_configuration_on_external_image_series[zarr] /usr/lib/python3.11/site-packages/pynwb/image.py:97: DeprecationWarning: ImageSeries 'TestImageSeries': The value for 'format' has been changed to 'external'. Setting a default value for 'format' is deprecated and will be changed to raising a ValueError in the next major release. warnings.warn( tests/test_ecephys/test_ecephys_interfaces.py::TestRecordingInterface::test_stub_multi_segment tests/test_ecephys/test_ecephys_interfaces.py::TestRecordingInterface::test_stub_single_segment tests/test_ecephys/test_mock_nidq_interface.py::TestMockSpikeGLXNIDQInterface::test_mock_run_conversion /var/tmp/portage/sci-biology/neuroconv-0.4.8/work/neuroconv-0.4.8-python3_11/install/usr/lib/python3.11/site-packages/neuroconv/basedatainterface.py:97: UserWarning: Using DataInterface.run_conversion without specifying nwbfile_path is deprecated. To create an NWBFile object in memory, use DataInterface.create_nwbfile. To append to an existing NWBFile object, use DataInterface.add_to_nwbfile. warnings.warn( # TODO: remove on or after 6/21/2024 tests/test_ecephys/test_mock_recording_interface.py::TestMockRecordingInterface::test_interface_alignment /usr/lib/python3.11/site-packages/spikeinterface/core/baserecording.py:418: UserWarning: Setting times with Recording.set_times() is not recommended because times are not always propagated across preprocessingUse this carefully! warn( tests/test_ecephys/test_tools_spikeinterface.py: 23 warnings /var/tmp/portage/sci-biology/neuroconv-0.4.8/work/neuroconv-0.4.8-python3_11/install/usr/lib/python3.11/site-packages/neuroconv/tools/spikeinterface/spikeinterface.py:121: UserWarning: When adding ElectrodeGroup, no Devices were found on nwbfile. Creating a Device now... warnings.warn("When adding ElectrodeGroup, no Devices were found on nwbfile. Creating a Device now...") tests/test_ecephys/test_tools_spikeinterface.py::TestAddElectricalSeriesWriting::test_write_with_lzf_compression /usr/lib/python3.11/site-packages/hdmf/utils.py:668: UserWarning: lzf compression may not be available on all installations of HDF5. Use of gzip is recommended to ensure portability of the generated HDF5 files. return func(args[0], **pargs) tests/test_ecephys/test_tools_spikeinterface.py::TestWriteWaveforms::test_group_name_property /usr/lib/python3.11/site-packages/spikeinterface/core/core_tools.py:312: ResourceWarning: unclosed file <_io.TextIOWrapper name='/var/tmp/portage/sci-biology/neuroconv-0.4.8/temp/spikeinterface_cache/tmpjs987phw/HMUZ5HQ5/traces_cached_seg0.raw' mode='r+' encoding='UTF-8'> executor.run() Enable tracemalloc to get traceback where the object was allocated. See https://docs.pytest.org/en/stable/how-to/capture-warnings.html#resource-warnings for more info. tests/test_ecephys/test_tools_spikeinterface.py::TestWriteWaveforms::test_group_name_property /usr/lib/python3.11/site-packages/spikeinterface/core/baserecording.py:550: ResourceWarning: unclosed file <_io.TextIOWrapper name='/var/tmp/portage/sci-biology/neuroconv-0.4.8/temp/spikeinterface_cache/tmpjs987phw/HMUZ5HQ5/traces_cached_seg0.raw' mode='r' encoding='UTF-8'> cached.set_probegroup(probegroup) Enable tracemalloc to get traceback where the object was allocated. See https://docs.pytest.org/en/stable/how-to/capture-warnings.html#resource-warnings for more info. tests/test_ecephys/test_tools_spikeinterface.py::TestWriteWaveforms::test_group_name_property /usr/lib/python3.11/site-packages/spikeinterface/core/base.py:864: ResourceWarning: unclosed file <_io.TextIOWrapper name='/var/tmp/portage/sci-biology/neuroconv-0.4.8/temp/spikeinterface_cache/tmpjs987phw/HMUZ5HQ5/traces_cached_seg0.raw' mode='r' encoding='UTF-8'> cached = self._save(folder=folder, verbose=verbose, **save_kwargs) Enable tracemalloc to get traceback where the object was allocated. See https://docs.pytest.org/en/stable/how-to/capture-warnings.html#resource-warnings for more info. tests/test_ecephys/test_tools_spikeinterface.py::TestWriteWaveforms::test_group_name_property /usr/lib/python3.11/site-packages/spikeinterface/core/core_tools.py:312: ResourceWarning: unclosed file <_io.TextIOWrapper name='/var/tmp/portage/sci-biology/neuroconv-0.4.8/temp/spikeinterface_cache/tmpolun60zk/0KCDYVD0/traces_cached_seg0.raw' mode='r+' encoding='UTF-8'> executor.run() Enable tracemalloc to get traceback where the object was allocated. See https://docs.pytest.org/en/stable/how-to/capture-warnings.html#resource-warnings for more info. tests/test_ecephys/test_tools_spikeinterface.py::TestWriteWaveforms::test_group_name_property /usr/lib/python3.11/site-packages/spikeinterface/core/core_tools.py:312: ResourceWarning: unclosed file <_io.TextIOWrapper name='/var/tmp/portage/sci-biology/neuroconv-0.4.8/temp/spikeinterface_cache/tmpolun60zk/0KCDYVD0/traces_cached_seg1.raw' mode='r+' encoding='UTF-8'> executor.run() Enable tracemalloc to get traceback where the object was allocated. See https://docs.pytest.org/en/stable/how-to/capture-warnings.html#resource-warnings for more info. tests/test_ecephys/test_tools_spikeinterface.py::TestWriteWaveforms::test_group_name_property /usr/lib/python3.11/site-packages/spikeinterface/core/baserecording.py:550: ResourceWarning: unclosed file <_io.TextIOWrapper name='/var/tmp/portage/sci-biology/neuroconv-0.4.8/temp/spikeinterface_cache/tmpolun60zk/0KCDYVD0/traces_cached_seg1.raw' mode='r' encoding='UTF-8'> cached.set_probegroup(probegroup) Enable tracemalloc to get traceback where the object was allocated. See https://docs.pytest.org/en/stable/how-to/capture-warnings.html#resource-warnings for more info. tests/test_ecephys/test_tools_spikeinterface.py::TestWriteWaveforms::test_group_name_property /usr/lib/python3.11/site-packages/spikeinterface/core/baserecording.py:550: ResourceWarning: unclosed file <_io.TextIOWrapper name='/var/tmp/portage/sci-biology/neuroconv-0.4.8/temp/spikeinterface_cache/tmpolun60zk/0KCDYVD0/traces_cached_seg0.raw' mode='r' encoding='UTF-8'> cached.set_probegroup(probegroup) Enable tracemalloc to get traceback where the object was allocated. See https://docs.pytest.org/en/stable/how-to/capture-warnings.html#resource-warnings for more info. tests/test_ecephys/test_tools_spikeinterface.py::TestWriteWaveforms::test_group_name_property /usr/lib/python3.11/site-packages/spikeinterface/core/base.py:864: ResourceWarning: unclosed file <_io.TextIOWrapper name='/var/tmp/portage/sci-biology/neuroconv-0.4.8/temp/spikeinterface_cache/tmpolun60zk/0KCDYVD0/traces_cached_seg1.raw' mode='r' encoding='UTF-8'> cached = self._save(folder=folder, verbose=verbose, **save_kwargs) Enable tracemalloc to get traceback where the object was allocated. See https://docs.pytest.org/en/stable/how-to/capture-warnings.html#resource-warnings for more info. tests/test_ecephys/test_tools_spikeinterface.py::TestWriteWaveforms::test_group_name_property /usr/lib/python3.11/site-packages/spikeinterface/core/base.py:864: ResourceWarning: unclosed file <_io.TextIOWrapper name='/var/tmp/portage/sci-biology/neuroconv-0.4.8/temp/spikeinterface_cache/tmpolun60zk/0KCDYVD0/traces_cached_seg0.raw' mode='r' encoding='UTF-8'> cached = self._save(folder=folder, verbose=verbose, **save_kwargs) Enable tracemalloc to get traceback where the object was allocated. See https://docs.pytest.org/en/stable/how-to/capture-warnings.html#resource-warnings for more info. tests/test_ecephys/test_tools_spikeinterface.py::TestWriteWaveforms::test_group_name_property tests/test_ecephys/test_tools_spikeinterface.py::TestWriteWaveforms::test_group_name_property /usr/lib/python3.11/site-packages/spikeinterface/qualitymetrics/misc_metrics.py:142: UserWarning: Bin duration of 60s is larger than recording duration. Presence ratios are set to NaN. warnings.warn( tests/test_ecephys/test_tools_spikeinterface.py::TestWriteWaveforms::test_group_name_property tests/test_ecephys/test_tools_spikeinterface.py::TestWriteWaveforms::test_group_name_property /usr/lib/python3.11/site-packages/spikeinterface/qualitymetrics/misc_metrics.py:842: UserWarning: Units [0, 1, 2, 3] have too few spikes and amplitude_cutoff is set to NaN warnings.warn(f"Units {nan_units} have too few spikes and " "amplitude_cutoff is set to NaN") tests/test_ecephys/test_tools_spikeinterface.py::TestWriteWaveforms::test_group_name_property tests/test_ecephys/test_tools_spikeinterface.py::TestWriteWaveforms::test_group_name_property /usr/lib/python3.11/site-packages/spikeinterface/qualitymetrics/misc_metrics.py:696: UserWarning: warnings.warn("") -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html ========================================================= short test summary info ========================================================== SKIPPED [2] tests/test_minimal/test_tools/test_backend_and_dataset_configuration/test_helpers/test_get_default_dataset_io_configurations.py:235: The extra testing package 'ndx-events' is not installed! SKIPPED [1] tests/test_ecephys/test_ecephys_interfaces.py:53: Only testing with Python 3.10! FAILED tests/test_ecephys/test_mock_recording_interface.py::TestMockRecordingInterface::test_conversion_as_lone_interface - AttributeError: 'NoiseGeneratorRecording' object has no attribute 'rename_channels' ==================================== 1 failed, 266 passed, 3 skipped, 50 warnings in 140.33s (0:02:20) ===================================== * ERROR: sci-biology/neuroconv-0.4.8::science failed (test phase): * pytest failed with python3.11 * * Call stack: * ebuild.sh, line 136: Called src_test * environment, line 3902: Called distutils-r1_src_test * environment, line 1928: Called _distutils-r1_run_foreach_impl 'python_test' * environment, line 722: Called python_foreach_impl 'distutils-r1_run_phase' 'python_test' * environment, line 3505: Called multibuild_foreach_variant '_python_multibuild_wrapper' 'distutils-r1_run_phase' 'python_test' * environment, line 3062: Called _multibuild_run '_python_multibuild_wrapper' 'distutils-r1_run_phase' 'python_test' * environment, line 3060: Called _python_multibuild_wrapper 'distutils-r1_run_phase' 'python_test' * environment, line 1154: Called distutils-r1_run_phase 'python_test' * environment, line 1851: Called python_test * environment, line 3789: Called epytest 'tests/test_minimal' 'tests/test_ecephys' * environment, line 2484: Called die * The specific snippet of code: * "${@}" || die -n "pytest failed with ${EPYTHON}"; * * If you need support, post the output of `emerge --info '=sci-biology/neuroconv-0.4.8::science'`, * the complete build log and the output of `emerge -pqv '=sci-biology/neuroconv-0.4.8::science'`. * The complete build log is located at '/var/tmp/portage/sci-biology/neuroconv-0.4.8/temp/build.log'. * The ebuild environment file is located at '/var/tmp/portage/sci-biology/neuroconv-0.4.8/temp/environment'. * Working directory: '/var/tmp/portage/sci-biology/neuroconv-0.4.8/work/neuroconv-0.4.8' * S: '/var/tmp/portage/sci-biology/neuroconv-0.4.8/work/neuroconv-0.4.8'